Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20652
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 175 4e-44
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 175 4e-44
AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans AP... 109 2e-24
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 75 4e-14
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 75 4e-14
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 34 0.093
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 28 8.1
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 175 bits (425), Expect = 4e-44
Identities = 83/101 (82%), Positives = 91/101 (90%)
Frame = +3
Query: 207 QKREKEGGR*KGYSIHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI 386
+K +K+ K + TVGKDVSALFPDVVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AI
Sbjct: 26 KKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAI 85
Query: 387 MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPL 509
MAVNTFVKDCED NPLIRALAVRTMGCIRV+KITEYLC+PL
Sbjct: 86 MAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPL 126
Score = 105 bits (253), Expect = 3e-23
Identities = 46/64 (71%), Positives = 61/64 (95%)
Frame = +2
Query: 506 IRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALS 685
+R+C+KDEDPYVRKTAAVCVAKL+D++ ++V++QGF++ L DLLSD+NPMVVANAVAAL+
Sbjct: 126 LRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANAVAALT 185
Query: 686 EINE 697
E+NE
Sbjct: 186 EMNE 189
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1
Query: 133 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASIQLEK 267
MTDSKYFTTTKKGEIFELK+ELNSD IAS+ + K
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGK 45
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 175 bits (425), Expect = 4e-44
Identities = 83/101 (82%), Positives = 91/101 (90%)
Frame = +3
Query: 207 QKREKEGGR*KGYSIHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI 386
+K +K+ K + TVGKDVSALFPDVVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AI
Sbjct: 26 KKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAI 85
Query: 387 MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPL 509
MAVNTFVKDCED NPLIRALAVRTMGCIRV+KITEYLC+PL
Sbjct: 86 MAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPL 126
Score = 105 bits (253), Expect = 3e-23
Identities = 46/64 (71%), Positives = 61/64 (95%)
Frame = +2
Query: 506 IRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALS 685
+R+C+KDEDPYVRKTAAVCVAKL+D++ ++V++QGF++ L DLLSD+NPMVVANAVAAL+
Sbjct: 126 LRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANAVAALT 185
Query: 686 EINE 697
E+NE
Sbjct: 186 EMNE 189
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1
Query: 133 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASIQLEK 267
MTDSKYFTTTKKGEIFELK+ELNSD IAS+ + K
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGK 45
>AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans APB-1
protein, isoform b protein.
Length = 226
Score = 109 bits (263), Expect = 2e-24
Identities = 59/93 (63%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Frame = +3
Query: 207 QKREKEGGR*KGYSIHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI 386
+K +K+ K + TVGKDVSALFPDVVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AI
Sbjct: 26 KKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAI 85
Query: 387 MAVNTFVKDC--EDSNPLIRALAVRTMGCIRVD 479
MAVNTFVK D N A V + R D
Sbjct: 86 MAVNTFVKVAIKNDINAFYFATTVPLLAYFRED 118
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1
Query: 133 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASIQLEK 267
MTDSKYFTTTKKGEIFELK+ELNSD IAS+ + K
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGK 45
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%)
Frame = +3
Query: 261 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIR 440
GKDVS LF VV + N+ELKKLV++YL+ YA+ Q D+A+++++TF + +D N LIR
Sbjct: 45 GKDVSELFAAVVKNVAAKNVELKKLVFVYLVRYAEEQQDLALLSISTFQRALKDPNQLIR 104
Query: 441 ALAVRTMGCIRVDKITEYLCEPLESA 518
A+R + IRV + + ++ A
Sbjct: 105 GSALRVLTSIRVPMVAPIMLLAIKDA 130
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +2
Query: 491 ISMRTIRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANA 670
I + I+ ++D PYVRK AA + KLY + + E Q +D + LL+D +V+ +A
Sbjct: 122 IMLLAIKDAVRDMSPYVRKVAAHAIPKLYSLEPEL-EPQ-LVDCIDFLLADRRSLVLGSA 179
Query: 671 VAALSEI 691
V A EI
Sbjct: 180 VYAFDEI 186
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%)
Frame = +3
Query: 261 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIR 440
GKDVS LF VV + N+ELKKLV++YL+ YA+ Q D+A+++++TF + +D N LIR
Sbjct: 45 GKDVSELFAAVVKNVAAKNVELKKLVFVYLVRYAEEQQDLALLSISTFQRALKDPNQLIR 104
Query: 441 ALAVRTMGCIRVDKITEYLCEPLESA 518
A+R + IRV + + ++ A
Sbjct: 105 GSALRVLTSIRVPMVAPIMLLAIKDA 130
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +2
Query: 491 ISMRTIRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANA 670
I + I+ ++D PYVRK AA + KLY + + E Q +D + LL+D +V+ +A
Sbjct: 122 IMLLAIKDAVRDMSPYVRKVAAHAIPKLYSLEPEL-EPQ-LVDCIDFLLADRRSLVLGSA 179
Query: 671 VAALSEI 691
V A EI
Sbjct: 180 VYAFDEI 186
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 34.3 bits (75), Expect = 0.093
Identities = 25/108 (23%), Positives = 48/108 (44%)
Frame = +3
Query: 249 IHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSN 428
I +G D+ + VN + ++ K++ YL++ + Q D+ + V D N
Sbjct: 64 IFLLGNDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLIEQQSDLMKLIVQGIRNDLTSRN 123
Query: 429 PLIRALAVRTMGCIRVDKITEYLCEPLESA*KMKILMSGKLQPCASQS 572
P+ LA++ + + ++ E C L K+L+SG+ QS
Sbjct: 124 PVHVNLALQCISNMGSREMVEAFCTDLP-----KLLVSGETIDFVKQS 166
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/54 (25%), Positives = 33/54 (61%)
Frame = +2
Query: 536 YVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINE 697
+V+++AA+C+ KL+ S + + ++ LL+DS+ VV +A + + +++
Sbjct: 162 FVKQSAALCILKLFRNSPDSFQPGDYASRIVHLLNDSHMGVVTSAASLIEALSK 215
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 335 GVLILNEL--CKVTARHGYHGSQY 400
G L++NEL C+V HG HG+ +
Sbjct: 41 GTLVMNELRPCEVCGAHGAHGNHF 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,392
Number of Sequences: 27780
Number of extensions: 314004
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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