Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20651
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   119   3e-28
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    30   0.28 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    29   0.64 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    27   2.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   4.5  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   6.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.9  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  119 bits (287), Expect = 3e-28
 Identities = 55/82 (67%), Positives = 66/82 (80%)
 Frame = +3

Query: 261 PALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP 440
           P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P
Sbjct: 71  PELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEP 130

Query: 441 EKTSFFQALSIPTKISKGTIEI 506
            KTSFFQAL IPTKI++GTIEI
Sbjct: 131 GKTSFFQALGIPTKITRGTIEI 152



 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 35/56 (62%), Positives = 44/56 (78%)
 Frame = +2

Query: 509 NDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 676
           +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL
Sbjct: 154 SDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDL 209



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +1

Query: 73  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIK 243
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 267 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA 419
           + KL   + G VG +FT     EV     E+ VQ   AR GA+AP + VIPA
Sbjct: 89  VSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 311 HEANVALDVWQQFLEGWIVSRWSLMALRIIVFFPMSTILEPRSEIRI 171
           HE  V  D  +Q    W    W LM + +++F  +  ILEPR   R+
Sbjct: 151 HEEQVWSDKIRQ-ASTW--GTWGLMGINVVLFVVVQLILEPRKRKRL 194


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 508 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 383
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 494 YY*NHNDVHILKPGDKVGASEATLLNML---NISPFSYGLVVKQVYDSG 631
           YY N N    L  GDK+  +    LN+L   +  PFS G VV+  Y +G
Sbjct: 276 YYINQNRKFHLLDGDKISTALVGYLNILVKKSGMPFSLG-VVQTAYANG 323


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 442 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 272
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 271 SRAGL 257
           S   L
Sbjct: 195 SEEEL 199


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 429 GLGPEKTSFFQALSIPTKISKGTIEIITMYTS 524
           G+G   TS FQ +S P+++SK    +I ++++
Sbjct: 345 GIGTNLTSDFQKVSNPSEVSKPMNIVIKLFSA 376


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 518 VHRYDFNSTL*NLGRDRKSLEERGLLWT 435
           VH YDF++   N  +DR S++   LL T
Sbjct: 28  VHIYDFDNVRLNPWKDRMSVKTNSLLQT 55


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +1

Query: 214 KNTMMRKAIKDHLETIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPL 393
           KN   +K I D  E      +C  T   T+ASCS  ++ + S T+  R  +K    L  L
Sbjct: 186 KNRKGKKEISDS-EPESDHDSCVSTD--TVASCSTEQSLITSNTSKHRRPNK---SLKDL 239

Query: 394 PHCQSSFPPTTPASV 438
              Q   PP  P +V
Sbjct: 240 LGIQKEKPPPPPVAV 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,086
Number of Sequences: 5004
Number of extensions: 67186
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)