Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20651
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 138 4e-33
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 31 0.68
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 30 1.6
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 3.6
SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 8.4
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 138 bits (334), Expect = 4e-33
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 NNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGL 434
NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGL
Sbjct: 53 NNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGL 112
Query: 435 GPEKTSFFQALSIPTKISKGTIEII 509
GPEKTSFFQAL+IPTKI++GTIEII
Sbjct: 113 GPEKTSFFQALAIPTKIARGTIEII 137
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +1
Query: 100 QLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLE 255
Q LDEYPK F+VG DNVGS+QM+ IR SLRG VLMGKNTM+RKAI+ HLE
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLE 52
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 31.5 bits (68), Expect = 0.68
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +1
Query: 121 KCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRAT 300
+C + V S ++Q +S+R + + ++ ++ + +I+P+R C HTS
Sbjct: 51 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110
Query: 301 LAS-CSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPA 432
L++ S+R C T SK+ V + Q PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 100 QLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNC 279
++L +C + V S ++Q +S+R + + ++ ++ + +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263
Query: 280 CHTSRATLAS-CSPAETSLRSVTNCWRTKSKL 372
HTS L++ S+R C T SK+
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 121 KCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRAT 300
+C + V S ++Q +S+R + + ++ ++ + +I+P+R C HTS
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379
Query: 301 L-ASCSPAETSLRSVTNCWRTKSKL 372
L A S+R C T SK+
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 139 ADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATL-ASCS 315
+ V S ++Q +S+R + + ++ ++ + +I+P+R C HTS L A
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360
Query: 316 PAETSLRSVTNCWRTKSKL 372
S+R C T SK+
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 121 KCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRAT 300
+C + V S ++Q +S+R + + ++ ++ + +I+P+R C HTS
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404
Query: 301 L-ASCSPAETSLRSVTNCWRTKSKL 372
L A S+R C T SK+
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 178 ISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCW 354
+S+R + + ++ ++ + +I+P+R C HTS L++ S+R C
Sbjct: 45 VSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQ 104
Query: 355 RTKSKLQLVLVPL 393
T SK+ V L
Sbjct: 105 HTSSKVLSTYVQL 117
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1
Query: 467 KSLEERGLLWTEAGVVGGNDD*QWG 393
K+LEERGLL+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = +1
Query: 142 DNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATLASCSPA 321
D +G QQ K ++ L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 322 ETSLRSVTNCWRT 360
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 421 WAGMTTDNGAMAPGRAGAWTLFSNSL 344
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 190 GSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATLASCSPAETSLR-SVTNCWR 357
G S + K R + DH E I P + C R + AS SP+ R +VT WR
Sbjct: 82 GGSGTQVAKYLHKRLVVGDHDEVITPFGDVCPRLRVS-ASASPSIVPRRGAVTRIWR 137
>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 201 RAHGKKHNDAQSHQRPPGNN 260
R HGKK S +RP GNN
Sbjct: 89 RHHGKKEKQRHSEKRPKGNN 108
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 331 TRSPRVNTKPTLPLMCGNSFSRAGLFP 251
T + R+ +K T P + ++FSR G+FP
Sbjct: 420 THAWRITSKATTPTLFWSTFSRMGVFP 446
>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 585 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 677
L S +++++ RY+ + LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,268,084
Number of Sequences: 59808
Number of extensions: 540995
Number of successful extensions: 1355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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