Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20651
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 131 5e-31
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 35 0.064
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 29 3.2
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 29 3.2
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 29 3.2
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 29 4.2
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 29 4.2
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 28 5.6
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.6
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 5.6
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 28 7.4
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical ... 27 9.8
AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical ... 27 9.8
AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 131 bits (316), Expect = 5e-31
Identities = 61/86 (70%), Positives = 71/86 (82%)
Frame = +3
Query: 252 GNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 431
G NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GAIAP V +P NTG
Sbjct: 70 GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129
Query: 432 LGPEKTSFFQALSIPTKISKGTIEII 509
+GPEKTSFFQAL IPTKI++GTIEI+
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEIL 155
Score = 105 bits (251), Expect = 4e-23
Identities = 42/69 (60%), Positives = 60/69 (86%)
Frame = +1
Query: 46 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTM 225
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QM++IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 226 MRKAIKDHL 252
+RKA++ HL
Sbjct: 61 IRKALRGHL 69
Score = 98.3 bits (234), Expect = 5e-21
Identities = 41/63 (65%), Positives = 54/63 (85%)
Frame = +2
Query: 509 NDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKF 688
NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+ E+LR +F
Sbjct: 156 NDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRF 215
Query: 689 QAG 697
+G
Sbjct: 216 LSG 218
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 34.7 bits (76), Expect = 0.064
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 267 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 443
L K +KG G +FT EV + E + AR G +A +VV+P +
Sbjct: 90 LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149
Query: 444 KTSFFQALSIPTKISKGTIEIITMY 518
+ L +PTK+ KG +IT+Y
Sbjct: 150 MEPQLRKLGLPTKLDKG---VITLY 171
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSS 198
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 199 IVLMGKNTMMRKAI 240
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 272 LEGWIVSRWSLMALRIIVF 216
+ GWIV+ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 272 LEGWIVSRWSLMALRIIVF 216
+ GWIV+ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 272 LEGWIVSRWSLMALRIIVF 216
+ GWIV+ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISL---R 189
RS Y +S R D +W Y +K+ ++ + + + N +++K++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 190 GSSIVLMGKNTMMRKAIKD 246
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 19 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISL---R 189
RS Y +S R D +W Y +K+ ++ + + + N +++K++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 190 GSSIVLMGKNTMMRKAIKD 246
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
complex protein protein12 protein.
Length = 1847
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -2
Query: 541 LVTGLQDVYIVMISIVPFEILVGIERAWKKEVFSGPRP 428
L+ QDVY+ + S++PF++L+ +R E+ + P P
Sbjct: 239 LLVPSQDVYLPVHSVLPFQVLIVKQRG--TEIVNMPNP 274
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 1 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 114
L+ K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 409 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 299
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 348 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 497
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 173 ICFICCEPTLSAPTMKHFGYSSKSWMILTK*LDFQVALSSLPILDSVA 30
I F CCE T+ TM+H S W + F+ A P L +++
Sbjct: 6 IVFRCCECTVEEQTMEHL--ESHIWSRHLQAFPFKCAYCDFPALSAIS 51
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 188 RSEIRICFICCEPTLSAPTMKHFGYSSKS 102
+ E+R C +CC S +HF SS S
Sbjct: 255 KEEVRYCLVCCCLVSSETIKQHFRLSSHS 283
>AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical
protein Y66H1B.2c protein.
Length = 950
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
LC PT GL T Q+C + T + G V DG + + ++E + G
Sbjct: 733 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 789
>AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical
protein Y66H1B.2b protein.
Length = 899
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
LC PT GL T Q+C + T + G V DG + + ++E + G
Sbjct: 682 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 738
>AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical
protein Y66H1B.2a protein.
Length = 897
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 363 LCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCFQVVFDGFAHHCVFSHEHDTG 193
LC PT GL T Q+C + T + G V DG + + ++E + G
Sbjct: 680 LCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGILTVQMDGPSKATLDAYELEKG 736
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,622,164
Number of Sequences: 27780
Number of extensions: 386697
Number of successful extensions: 1131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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