Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20651
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 109 2e-24
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 109 2e-24
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 107 5e-24
At3g50610.1 68416.m05534 hypothetical protein 31 0.56
At1g58220.1 68414.m06612 myb family transcription factor contain... 30 1.3
At5g13260.1 68418.m01523 expressed protein 29 2.2
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.2
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 3.9
At1g22080.1 68414.m02761 hypothetical protein 29 3.9
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 6.8
At2g06850.1 68415.m00767 xyloglucan:xyloglucosyl transferase / x... 28 6.8
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 6.8
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 9.0
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 109 bits (261), Expect = 2e-24
Identities = 52/92 (56%), Positives = 68/92 (73%)
Frame = +3
Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 416
H GN A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 68 HSENSGNT-AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126
Query: 417 AHNTGLGPEKTSFFQALSIPTKISKGTIEIIT 512
NTGL P +TSFFQ L+IPTKI+KGT+EIIT
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +2
Query: 515 VHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQA 694
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFAS 219
Query: 695 G 697
G
Sbjct: 220 G 220
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +1
Query: 46 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTM 225
M + KA K Y K+ QL+DEY + +V ADNVGS Q++ IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 226 MRKAIKDHLE 255
M+++++ H E
Sbjct: 61 MKRSVRIHSE 70
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 109 bits (261), Expect = 2e-24
Identities = 52/92 (56%), Positives = 68/92 (73%)
Frame = +3
Query: 237 HQRPPGNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 416
H GN A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 68 HSENTGNT-AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126
Query: 417 AHNTGLGPEKTSFFQALSIPTKISKGTIEIIT 512
NTGL P +TSFFQ L+IPTKI+KGT+EIIT
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +2
Query: 515 VHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQA 694
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +
Sbjct: 160 VELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFAS 219
Query: 695 G 697
G
Sbjct: 220 G 220
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +1
Query: 46 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTM 225
M + KA K Y K+ QL+DEY + +V ADNVGS Q++ IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 226 MRKAIKDHLE 255
M+++++ H E
Sbjct: 61 MKRSVRIHSE 70
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 107 bits (258), Expect = 5e-24
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +3
Query: 258 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 437
N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134
Query: 438 PEKTSFFQALSIPTKISKGTIEIIT 512
P +TSFFQ L+IPTKI+KGT+EIIT
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +2
Query: 515 VHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQA 694
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF A
Sbjct: 161 VELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAA 220
Query: 695 G 697
G
Sbjct: 221 G 221
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +1
Query: 61 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAI 240
KA K Y K+ QLL+EY + +V ADNVGS Q++ IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 241 KDHLE 255
+ H +
Sbjct: 67 RIHAD 71
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 PGNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHN 425
PGN+P + H KGNV + D KLL+ VQ + G+ + P H+
Sbjct: 37 PGNSPGVG----HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHS 92
Query: 426 TGLGPEK 446
G+G +K
Sbjct: 93 PGVGHKK 99
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 30.3 bits (65), Expect = 1.3
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Frame = -2
Query: 535 TGLQDVYIVMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 356
TGLQ M + + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 355 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGL 257
+LSR +T P ++ + GNS SRA L
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADL 352
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 205 ARYWSHVARYGSASSVASPRYRH 137
ARYW +RYG S +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 255 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 353
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 193 SSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATLASCSPAETSLRSVTN 348
SSI + K + + DHLETI N R L+ CS ++ L TN
Sbjct: 674 SSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTN 725
>At1g22080.1 68414.m02761 hypothetical protein
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 589 WRDVQHVEKGGFRSSNLVTGLQDVYIVMISIV 494
WR +H+ +G + TG DV IV + ++
Sbjct: 214 WRIGEHIYRGPLEENTQFTGFHDVVIVKVDVI 245
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 406 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 293
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 265 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 369
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At2g06850.1 68415.m00767 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (EXT) (EXGT-A1) identical to endo-xyloglucan
transferase (ext) GI:469484 and endoxyloglucan
transferase (EXGT-A1) GI:5533309 from [Arabidopsis
thaliana]
Length = 296
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 254 SRWSLMALRIIVFFPMSTILEPRSEIRICF-ICCEPTLSAPTMKHFGYSSKSWMILTK 84
S W+LMAL ++V M + PR I + F PT + K F S+ +IL K
Sbjct: 6 SPWALMALFLMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDK 63
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 422 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 276
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 139 ADNVGSQQMKQIRISLRGSSIVLMGKNTMMRKAIKDHLETIQPSRNCCHTSRATLASCSP 318
ADN+ S++ KQ ++ SS+ +G ++ +++ + C H+ + LA P
Sbjct: 811 ADNMDSEEGKQTCVNDTSSSLTKVGVKG------SSNVLSVERTGGCSHSDESDLAMAVP 864
Query: 319 AETSLRSVT 345
+E + +V+
Sbjct: 865 SEGCMENVS 873
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,085
Number of Sequences: 28952
Number of extensions: 376138
Number of successful extensions: 1083
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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