Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +1

Query: 439 TCGKGVRLAPDQGSCSRAQGSKC 507
           +C + +   P  G C  + G KC
Sbjct: 587 SCAENMMFDPMSGKCEYSLGEKC 609


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 9   DAER--VARPLHPPRHDRAPRRLLAFTKSRLTSSSSAIVVI 125
           DA R   A+PL   R+ R PR+ L F     T ++   +++
Sbjct: 267 DANRNDCAKPLTQIRNIRGPRKRLRFAYVTRTGANIKKLIV 307


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 273 GLHGAASWSRSSK 235
           GLH  ASW +S K
Sbjct: 413 GLHFHASWLKSKK 425


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 273 GLHGAASWSRSSK 235
           GLH  ASW +S K
Sbjct: 420 GLHFHASWLKSKK 432


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -3

Query: 511 WHTWSP 494
           WHTW P
Sbjct: 475 WHTWMP 480


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 393 GADGLPLQRRPADARTRRVAS 331
           GA G     RPA A+ RRVA+
Sbjct: 298 GAGGPLHDHRPALAQQRRVAA 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,395
Number of Sequences: 336
Number of extensions: 1480
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)