Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   3.0  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   4.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   7.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.2  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 357  DARTRRVASCLARRREDKEGSSGEEVGPGLHGAASWSRSSK*VFCEY 217
            + RT  + SCLAR      G+   E+   L    SW   +K ++  Y
Sbjct: 1583 ETRTSTITSCLARNLRGGLGAGAVEMIEKLCIPESWLNEAKALYARY 1629


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 157 IQELNQQAASKITTIALELEVNLD 86
           ++E+N+ A+ K+T++ LEL ++ D
Sbjct: 587 VREINRDASGKVTSLKLELHLDGD 610


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 442 CGKGVRLAPDQGSCSRAQGSKCATAARWS 528
           C + + LAPD G    A GSK  T   W+
Sbjct: 227 CWQPLHLAPDSGPYLLASGSKDNTVRIWN 255


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 212 TELVSHCCPRSLLRHMLRDTRAQ 144
           + +V  CC R LLR   R+ R+Q
Sbjct: 312 SSVVKTCCTRCLLRERKRNARSQ 334


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  PRRLLAFTKSRLTSSSSAIVVIFEAACWLSSCI 158
           P  LLA    R T SSSAI +I E A  L S I
Sbjct: 328 PGILLALLSLRTTLSSSAIQLIKEMAIILKSNI 360


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 345 RRVASC-LARRRE-DKEGSSGEEVGPGLHGAASWSRSSK*VFC 223
           RR+++  LA R   +++ + G+EVG  +HG  S S+ +   FC
Sbjct: 635 RRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFC 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,349
Number of Sequences: 5004
Number of extensions: 23102
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)