Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0152 + 14153539-14154060                                         31   0.76 
03_05_0065 + 20450814-20452748                                         29   3.1  
02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891           29   3.1  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    28   5.3  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    27   7.1  
10_01_0334 - 3680612-3681266,3682253-3682374                           27   7.1  
04_02_0011 - 8513471-8513673,8513815-8513869                           27   7.1  
09_06_0233 - 21740974-21741159,21741263-21741455,21741552-217417...    27   9.3  

>11_04_0152 + 14153539-14154060
          Length = 173

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 417 RGVDVPVGGADGLPLQRRPADARTRRVASCLARRREDKEGSSGEEVG 277
           RG D   GG DG+  QR  ADA       C  R RE        ++G
Sbjct: 115 RGGDCDAGGGDGMASQR--ADAAVGAAGGCWRREREGAATGGATDLG 159


>03_05_0065 + 20450814-20452748
          Length = 644

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 245 GLASESSVSIATELVSHCCPRSLLR-HMLR 159
           GLASE     A EL+S  C R  LR H++R
Sbjct: 610 GLASEGLAKEAQELLSELCSRGALRKHLMR 639


>02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891
          Length = 414

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 333 SCLARRREDKEGSSGEEVGPGLH---GAASWSRSSK*VFCE 220
           +C AR+R  ++GS G  V  G+H    A ++SRSS   F E
Sbjct: 57  TCPARKRARQQGSHGASVQAGIHDLQDAPAFSRSSSDNFGE 97


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +1

Query: 334 RDASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTCGKGVRLAPDQGSCSRAQGSKC 507
           R   CP + G   QG+        + P  C M    C KG R      +CS +  S C
Sbjct: 447 RICQCPVVDGVQYQGDGYTHCKA-VGPGRCAMNNGGCWKGTRDGKTFSACSDSDLSGC 503


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 1   PPSTPNVWPAPYIHH 45
           PPS P   PAPY HH
Sbjct: 77  PPSMPGPLPAPYDHH 91


>10_01_0334 - 3680612-3681266,3682253-3682374
          Length = 258

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 426 LAERGVDVPVGGADGLPLQRRPADARTRRVASCLARRREDKEGSSGEE 283
           L E    V + G +    +RR A  R R+ A   AR RED E +SGE+
Sbjct: 29  LLESWQSVKIEGQEKATQRRRAARMRQRQQA---ARGREDGEKASGED 73


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 337 DASCPRICGPALQGEPVC-ATDGYIYPSLC 423
           DA+C  IC    Q +  C +TDG  Y + C
Sbjct: 44  DATCKAICSDKYQSKGECFSTDGLYYCNFC 73


>09_06_0233 -
           21740974-21741159,21741263-21741455,21741552-21741787,
           21742207-21742367,21742462-21742512,21743279-21743648
          Length = 398

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 521 RAAVAHLEPCAREHEPWSGASRTPFP 444
           RAA ++   C    EPWSGA+  P P
Sbjct: 12  RAAGSNPIGCLEVAEPWSGAAPPPLP 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,768
Number of Sequences: 37544
Number of extensions: 228434
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)