Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    39   0.003
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    39   0.003
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    36   0.018
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    28   4.8  
L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    27   8.3  
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    27   8.3  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 337 DASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTC-GKGVRLAPDQGSC 483
           +  CP  C   ++  PVCAT+G  + + C M+KK+C  K +     QG+C
Sbjct: 390 ECECPNRCEDVMR--PVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 437



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +1

Query: 337 DASCPRICGPALQ---GEPVCATDGYIYPSLCXMRKKTCGKG-VRLAPDQGSCSRAQGSK 504
           +  CP  C P+ +   G+ VC TDG  Y S C M+K  C +    +   +G C      +
Sbjct: 533 ECKCPDDC-PSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDECLHVQ 591

Query: 505 C 507
           C
Sbjct: 592 C 592



 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 343 SCPRICGPALQGEPVCATDGYIYPSLCXMRKKTCGKGVRLA 465
           +CP    P L    +C  +G +YPSLC ++  +C KG  ++
Sbjct: 608 NCP--ANPPLSAR-ICGENGVLYPSLCHLQLASCQKGAPIS 645



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +1

Query: 316 PTSEAARDASCPRICGPALQG----EPVCATDGYIYPSLCXMRKKTC 444
           P+  +  D  CP+ C     G      VC +DG  Y +LC ++   C
Sbjct: 853 PSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFAC 899



 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 337 DASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTCGKGVR-LAPDQGSCSRAQGSKC 507
           +  C   C   +    VC TDG  Y + C ++   C +    L   +G+C  A GS C
Sbjct: 316 ECKCSEQC--TMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEA-GSPC 370


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 337 DASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTC-GKGVRLAPDQGSC 483
           +  CP  C   ++  PVCAT+G  + + C M+KK+C  K +     QG+C
Sbjct: 398 ECECPNRCEDVMR--PVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 445



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +1

Query: 337 DASCPRICGPALQ---GEPVCATDGYIYPSLCXMRKKTCGKG-VRLAPDQGSCSRAQGSK 504
           +  CP  C P+ +   G+ VC TDG  Y S C M+K  C +    +   +G C      +
Sbjct: 541 ECKCPDDC-PSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDECLHVQ 599

Query: 505 C 507
           C
Sbjct: 600 C 600



 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 343 SCPRICGPALQGEPVCATDGYIYPSLCXMRKKTCGKGVRLA 465
           +CP    P L    +C  +G +YPSLC ++  +C KG  ++
Sbjct: 616 NCP--ANPPLSAR-ICGENGVLYPSLCHLQLASCQKGAPIS 653



 Score = 30.7 bits (66), Expect = 0.67
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +1

Query: 316 PTSEAARDASCPRICGPALQG----EPVCATDGYIYPSLCXMRKKTCGKGVRLAP-DQGS 480
           P+  +  D  CP+ C     G      VC +DG  Y +LC ++   C   + + P   G 
Sbjct: 792 PSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGI 851

Query: 481 C 483
           C
Sbjct: 852 C 852



 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 337 DASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTCGKGVR-LAPDQGSCSRAQGSKC 507
           +  C   C   +    VC TDG  Y + C ++   C +    L   +G+C  A GS C
Sbjct: 324 ECKCSEQC--TMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEA-GSPC 378


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 382 PVCATDGYIYPSLCXMRKKTCGKGVRLAPDQGSCSRAQGSKCATAA 519
           P+CA+D   Y +LC  RK+ C         +G CS    S CA  A
Sbjct: 596 PICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSECLDSPCALPA 641



 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +1

Query: 379 EPVCATDGYIYPSLCXMRKKTC-----GKGVRLAPDQGSCSRAQ 495
           +PVC T+G +Y +LC  + + C      + ++LA D+  C R++
Sbjct: 125 DPVCDTNGSVYRNLCVFQMRRCELQLESQRIQLAEDRKFCLRSR 168



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 319  TSEAARDASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTC 444
            T E    ASCP+       G+PVC + G  + SLC      C
Sbjct: 1064 TGECCALASCPKT------GQPVCDSRGRTHDSLCHFHNSKC 1099


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 251 GHGLASESSVSIATELVSHCCPRSLLRHMLRDTR 150
           G+ L S   +++ + ++ HC    L  H+LR +R
Sbjct: 274 GYSLLSYDILNVGSPIIMHCVSSKLRNHVLRGSR 307


>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 316 PTSEAARDASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTC 444
           PT E    + CP + G  +  + VCA +   + SLC + ++ C
Sbjct: 72  PTCECI--SKCPELDGDPM--DKVCANNNQTFTSLCDLYRERC 110


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 316 PTSEAARDASCPRICGPALQGEPVCATDGYIYPSLCXMRKKTC 444
           PT E    + CP + G  +  + VCA +   + SLC + ++ C
Sbjct: 72  PTCECI--SKCPELDGDPM--DKVCANNNQTFTSLCDLYRERC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,917,200
Number of Sequences: 27780
Number of extensions: 158524
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)