Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 378 PLQRRPADARTRRVASCLARRREDKEGSSGEEVGPGLHGAASWSR 244
           PL  +P   +++     +ARR E    S   ++G      A WSR
Sbjct: 348 PLHCKPELGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSR 392


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  ARPLHPPRHDRA-PRRLLAFTKSRLTSSSSA 113
           +RPLHPP    + P  +   T +  T++++A
Sbjct: 91  SRPLHPPASSTSLPATITTTTTTTTTTTATA 121


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 420 ERGVDVPVGGADGLPLQRRPADAR 349
           +R   +PVG    +P    PAD R
Sbjct: 260 KRFFGLPVGVTAAIPTSENPADYR 283


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 420 ERGVDVPVGGADGLPLQRRPADAR 349
           +R   +PVG    +P    PAD R
Sbjct: 260 KRFFGLPVGVTAAIPTSENPADYR 283


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 420 ERGVDVPVGGADGLPLQRRPADAR 349
           +R   +PVG    +P    PAD R
Sbjct: 260 KRFFGLPVGVTAAIPTSENPADYR 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,571
Number of Sequences: 438
Number of extensions: 1789
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)