Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20650
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18140.1 68418.m02130 DNAJ heat shock N-terminal domain-conta...    28   4.5  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    27   7.8  

>At5g18140.1 68418.m02130 DNAJ heat shock N-terminal
           domain-containing protein similar to DnaJ protein Tid-1
           [Homo sapiens] GI:17066575; contains Pfam profile
           PF00226 DnaJ domain
          Length = 333

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 72  LAFTKSRLTSSSSAIVVIFEAACWLSSCIAQHVP 173
           L F       +SS++VV+   A W+ S +A+H P
Sbjct: 279 LTFASWLCGKASSSVVVLVLVAMWVGSNLARHAP 312


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 358 CGPALQGEPVCATDGYIYPSLC-XMRKKTCGKGVRLAPDQGSCSRA 492
           C P ++G PV A +G++   L   +R+K  G  ++L    G+ + A
Sbjct: 276 CLPGMEGAPVFAKNGHLIGILIRPLRQKNSGVEIQLVVPWGAITTA 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,393,134
Number of Sequences: 28952
Number of extensions: 145233
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)