Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20649
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 89 6e-19
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 69 9e-13
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 28 1.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.0
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 27 2.0
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 2.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.5
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 25 7.9
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 7.9
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 7.9
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 7.9
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 89.0 bits (211), Expect = 6e-19
Identities = 43/68 (63%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
Frame = +2
Query: 494 IRCETHHKVLDMCAAPGSKTAQLIEFLHADEDK------MPTGFVMANDVDNSRCYMLVH 655
+ E+HHKVLDMCAAPGSKTAQL+E LH K +P+G V+AND DN R +MLVH
Sbjct: 139 LNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVH 198
Query: 656 QAKRLNSP 679
Q KRLNSP
Sbjct: 199 QIKRLNSP 206
Score = 71.7 bits (168), Expect = 9e-14
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +3
Query: 324 PVNLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDV 503
PV+LPWYP G A+ L +++ IR++ L L FLV ET AG ++RQE VSM+PP++L+V
Sbjct: 82 PVSLPWYPDGMAFMLDISKEVIRKSPHLKALQEFLVLETEAGDINRQESVSMVPPLLLNV 141
Query: 504 KPTIRCL-TCVLP 539
+ + L C P
Sbjct: 142 ESHHKVLDMCAAP 154
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 80 YEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGS 217
Y ++ N FE+YY++QK+ E+ + + Q L E LPT FRIT S
Sbjct: 5 YVYLLDRNENFEKYYRLQKLVTEDDFILLKQKLTEQLPTTFRITAS 50
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 68.5 bits (160), Expect = 9e-13
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +3
Query: 324 PVNLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDV 503
P LPWYP G A+ + + IR++ L RL FLV+E AG ++RQE VSM+PP+ LDV
Sbjct: 98 PTVLPWYPDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEAGNINRQEAVSMLPPLFLDV 157
Query: 504 KP 509
+P
Sbjct: 158 EP 159
Score = 67.7 bits (158), Expect = 1e-12
Identities = 39/70 (55%), Positives = 43/70 (61%), Gaps = 11/70 (15%)
Frame = +2
Query: 503 ETHHKVLDMCAAPGSKTAQLIEFLH-------ADED----KMPTGFVMANDVDNSRCYML 649
E HH +LDMCAAPGSKTAQLIE ++ A D K G V+AND D R ML
Sbjct: 158 EPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQML 217
Query: 650 VHQAKRLNSP 679
VHQ RLNSP
Sbjct: 218 VHQINRLNSP 227
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Frame = +2
Query: 71 RKAYED---IVRENAAFEEYYKMQKIC---PEEQWPVFMQTLKENLPTAFRITG 214
++AY D IV EN FE YYK Q + P +++ FM+ +++ LPT FRI G
Sbjct: 12 KRAYNDKSEIVLENKQFEGYYKKQNLFRGKPNDEFDSFMEYMRKPLPTTFRICG 65
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 372 LTRMDIRRN-EALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPTIRCLTCVLPRGL 548
LTR D+ + + YR +++ +AG +S +E V + ++P+ L+ PRGL
Sbjct: 186 LTREDLLQYIKDNYRSDRMIIS--SAGSISHEELVKLAEKYFGHLEPSAEQLSLGAPRGL 243
Query: 549 RP 554
+P
Sbjct: 244 KP 245
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 11 RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENA 106
+K RK++E +P+ + NR +Y D+ R ++
Sbjct: 672 KKYIRKDRELSPRGRERSSNRNSYSDLSRSSS 703
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 60 TGIIERLMKILFEKMPHSKNTIRCKKSAQKSSGRSSCKLS 179
TG+ E L K+ H+ +I KS + SGR CK++
Sbjct: 244 TGLGEPCFDKLEAKLAHAMMSIPATKSFEIGSGREGCKVA 283
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 503 ETHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRL 670
+ + ++LDM +APG K + + TG + AND + +R L RL
Sbjct: 338 QPNERILDMSSAPGGKVTYVAAL------QKNTGIIFANDSNKARTKALSANIHRL 387
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +2
Query: 14 KRDRKEQEKNPQEKPNGDNRKAYEDIVREN----AAFEEY--YKMQKICPEEQWPV 163
K D K QEK PQ + +G +K ++ ++ + EE Y +K+C Q+ V
Sbjct: 766 KSDSKVQEKAPQNEADGSLKKDEHVVLSDDYWMKPSIEELSKYPKEKLCSVHQFSV 821
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 518 VLDMCAAPGSKTAQL 562
++D CAAPG+KT L
Sbjct: 214 IIDGCAAPGNKTTHL 228
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 14 KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEE 118
K + KE + +P+E P G+ ++ ++ + EE
Sbjct: 619 KENLKEDDNHPRESPQGNLQRELNELDEDKRKLEE 653
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 500 CETHHKVLDMCAAPGSKTAQLIEFLHADEDK 592
CE H LD+ G K L +H D D+
Sbjct: 157 CEEFHLYLDVLLLVGDKDRALDALIHQDADR 187
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 163 DRPLLFWADFLHL 125
D P FW+DFLHL
Sbjct: 533 DYPSSFWSDFLHL 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,717
Number of Sequences: 5004
Number of extensions: 54176
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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