Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20649
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 80 2e-15
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 76 2e-14
05_05_0299 - 23930657-23932627 33 0.29
05_01_0372 - 2913518-2916562,2916674-2917528 31 0.67
11_06_0636 - 25711965-25712232,25712438-25712502,25713033-257132... 30 1.5
03_06_0146 - 31976538-31978643,31978653-31978751 30 2.0
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 30 2.0
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 29 3.5
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475... 29 4.7
09_03_0009 + 11463049-11463063,11464136-11464492 28 6.2
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 28 6.2
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 28 8.2
09_02_0185 - 5500208-5500711 28 8.2
05_06_0088 - 25453249-25453282,25453369-25453461,25454111-254541... 28 8.2
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +3
Query: 333 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPT 512
LPWYPG AW L +RM +RRN+AL H FL E G ++RQE VSM+PP+ L+V+P
Sbjct: 132 LPWYPGNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPD 191
Query: 513 IRCL-TCVLP 539
L C P
Sbjct: 192 HHILDMCAAP 201
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Frame = +2
Query: 494 IRCETHHKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVDNSRCYMLVHQAKR 667
+ + H +LDMCAAPGSKT QL+E +H +P V+ANDVD RC +L+HQ KR
Sbjct: 186 LNVQPDHHILDMCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKR 245
Query: 668 L 670
+
Sbjct: 246 M 246
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +2
Query: 65 DNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGS 217
+ +++ EN AFE+YYK Q+I PE +W FM L++ LP FRI S
Sbjct: 47 EGNPSWQPFATENPAFEDYYKAQQIIPEGEWDDFMNMLRKPLPATFRINAS 97
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 76.2 bits (179), Expect = 2e-14
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +3
Query: 333 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPT 512
LPWYPG AW L +R +R+N+AL H FL E+ G ++RQE VSM+PP+ L+++P
Sbjct: 168 LPWYPGNLAWHLNFSRKQLRKNQALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPD 227
Query: 513 IRCL-TCVLP 539
L C P
Sbjct: 228 HHVLDMCAAP 237
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +2
Query: 44 PQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRITGS 217
P G+ ++++ EN AFEEYYK Q+I EE+W F+ L++ LP FRI S
Sbjct: 57 PAAAARGEANRSWQPPPLENPAFEEYYKEQRIVREEEWDDFISVLRKPLPATFRINAS 114
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 494 IRCETHHKVLDMCAAPGSKTAQLIEFLHADED 589
+ + H VLDMCAAPGSKT QL+E +H ++
Sbjct: 222 LNIQPDHHVLDMCAAPGSKTFQLLEMIHQSKE 253
>05_05_0299 - 23930657-23932627
Length = 656
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 20 DRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICP--EEQWPV 163
D K + K Q KPN YE + ++ +Y M+KI P E +W V
Sbjct: 518 DLKTRFKYKQVKPNSFGLSTYEILASDDKDLNQYVSMKKIAPYREAEWKV 567
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 8 QRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKE 184
++ D +E ++ P KP ++ A ++NA F+EY K+ ++QW ++ LKE
Sbjct: 936 EQDEDEEEYDQLPPFKPLTKSQLARLTKEQKNAYFDEYDYRVKLLQKKQWKDEIRRLKE 994
>11_06_0636 -
25711965-25712232,25712438-25712502,25713033-25713296,
25713405-25713854
Length = 348
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 425 SCSRDGSRRSLETRTGVDDTSRSIRCETHHKVLDMCAAPGSKTAQLIEFLH 577
SC DG L VD S+ + + ++D+ AA G+ TA+ I+ LH
Sbjct: 86 SCCGDGQMYRLVGSRAVDAKLDSVNNKISNCLMDLLAAQGAGTAKKIDELH 136
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 8 QRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVF 166
+ + D E+ +E+ +G N+ Y+ I E+ EE M++ EE+WP F
Sbjct: 350 EEESDCDEEIDEEEEEEHGGNK--YDAIDNESFGEEESVCMEQSYAEEEWPEF 400
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 515 KVLDMCAAPGSKTAQLIEFLHAD 583
KV+D CAAPG+KT L ++ +
Sbjct: 217 KVIDACAAPGNKTVHLAALMNGE 239
>08_02_0095 -
12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 11 RKRDRKEQEKNPQEKPNGDN 70
RK++RKE +K+ +K NGDN
Sbjct: 879 RKKERKETKKHIMQKENGDN 898
>08_02_0423 -
16946435-16946542,16946924-16947045,16947442-16947504,
16949707-16949844,16950062-16950170,16950610-16950934,
16952482-16952645
Length = 342
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 515 KVLDMCAAPGSKTAQL 562
++LDMCAAPG KT +
Sbjct: 273 RILDMCAAPGGKTTAI 288
>09_03_0009 + 11463049-11463063,11464136-11464492
Length = 123
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 114 KNTIRCKKSAQKSSGRSSCKLSKRIYLRHSVSQDLR 221
+ ++RC+ +S + C+ S+ IY RH S+DLR
Sbjct: 76 RGSLRCRSKTSRSHTSTICRESRVIYGRH--SRDLR 109
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 518 VLDMCAAPGSKTAQLIEFL 574
VLD+CAAPG+K L + L
Sbjct: 111 VLDLCAAPGAKLCMLADML 129
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 518 VLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRLNSPA 682
++D CAAPG KT + L G + A D++ R +L+ AK N A
Sbjct: 418 IIDCCAAPGGKTLFMAARLSGQ------GKIWALDINKGRLRILMEAAKLHNLDA 466
>09_02_0185 - 5500208-5500711
Length = 167
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRLNSPA 682
KVLD C + A E + + ++ + DVDN+ + L+ A LN P+
Sbjct: 63 KVLDYCKKHAAAAAAAAEDVAVKDQELKSFDASFIDVDNTMLFGLILAANYLNVPS 118
>05_06_0088 -
25453249-25453282,25453369-25453461,25454111-25454199,
25454603-25454665,25454935-25455024,25455204-25455264,
25455499-25455593,25455861-25455950,25456136-25456222,
25456992-25457303
Length = 337
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 92 VRENAAFEEYYKMQKICPEEQWPVFMQTLKEN 187
+REN A ++K+ P+E V++ T++ N
Sbjct: 223 LRENVALSSFFKILTTSPDENGEVYVSTVQAN 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,437,824
Number of Sequences: 37544
Number of extensions: 381018
Number of successful extensions: 1119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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