Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20649
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)         38   0.006
SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)         38   0.006
SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)              28   8.4  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)
          Length = 219

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/52 (44%), Positives = 26/52 (50%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRL 670
           +VLDMCAAPG KT  L   +        TG V+AND    R   LV    RL
Sbjct: 157 RVLDMCAAPGGKTTYLAALM------KNTGIVVANDAKKERTKALVANIHRL 202


>SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)
          Length = 467

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/52 (44%), Positives = 26/52 (50%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRL 670
           +VLDMCAAPG KT  L   +        TG V+AND    R   LV    RL
Sbjct: 405 RVLDMCAAPGGKTTYLAALM------KNTGIVVANDAKKERTKALVANIHRL 450


>SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 603 PVGILSSSACRNSMSCAVLDPGAAHMS 523
           P   +S S C  SM C VLDPGAAH+S
Sbjct: 55  PAMPVSLSPCSISMICDVLDPGAAHVS 81


>SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 129 CKKSAQKSSGRSSCKLSKRIYLRHSVSQDLRAN*RS-NEDCEQDY 260
           C +SA +SSGRS CK+S R + + ++ + L ++ R   EDC + Y
Sbjct: 321 CAESAVRSSGRSLCKMSGREWAQGNI-RCLESDYRCLCEDCGKPY 364


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 476  RHLFLSRDSS--CCRLCYKKVMKPIQCLVTPDIHTGEP*LPCK 354
            RHL+  +D    CC LC +   K ++ +     H GE    CK
Sbjct: 1025 RHLYSHKDGKPMCCHLCSEAFTKALKAVEHQRTHAGEKPYRCK 1067


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 556  CGLRPRGSTHVKHLMVGFTSNTTGGIIDTCSCLETPPAAVSATR 425
            C +RP  S HVK  MV  +  T  G  DT   L +P     A++
Sbjct: 1781 CSVRPVDSEHVKEYMVSSSVLTASGQYDTGRGLHSPSPLPKASQ 1824


>SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)
          Length = 424

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 50  EKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLP 193
           E P GD R A    VR     ++  +   ICP+E+  VF++ L  ++P
Sbjct: 83  EAPIGDLRFAKSKPVRSWNGVKDATQHGPICPQEKDEVFIRMLNIDIP 130


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 382 WISGVTRHCIGFITFL*QRRQQEESRDKNRC 474
           WI+ +   CIG   F+   +QQE+SR K+RC
Sbjct: 198 WIALIACVCIGIAIFM-YHKQQEDSR-KSRC 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,691,390
Number of Sequences: 59808
Number of extensions: 455499
Number of successful extensions: 1398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)