Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20649
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    74   1e-13
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    36   0.021
Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical pr...    32   0.45 
AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.     27   9.8  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   9.8  
AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +2

Query: 506 THHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQA-KRLNSPA 682
           + H VLD+CAAPGSKT QL+E +H +E+  P G V+ANDVD  RCYML+H   KR  + A
Sbjct: 169 SEHFVLDLCAAPGSKTTQLLEMIHENEEN-PKGMVIANDVDMKRCYMLIHHTLKRFRTAA 227



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/58 (50%), Positives = 39/58 (67%)
 Frame = +3

Query: 324 PVNLPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVL 497
           P +LPWY    A+Q  ++R  +R +  L +LHNFLV E   G +SRQE VSMIPP++L
Sbjct: 110 PKSLPWYKE--AYQTPMSRTAVRSHPILAQLHNFLVTEAELGNLSRQEAVSMIPPLLL 165



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +2

Query: 5   AQRKRDRKEQEKNPQEKPNGDNRKA-----YEDIVRENAAFEEYYKMQKICPEEQWPVFM 169
           ++RK   K +   P+E    D+R A     Y  + +EN  + +YYK Q + P EQ+  F 
Sbjct: 5   SRRKFKSKNKGHEPRENVWRDDRDAPGNQGYRMVEKENEKYWQYYKEQNVFPLEQFDEFR 64

Query: 170 QTLKENLPTAFRITG 214
             L+ +LP +FR  G
Sbjct: 65  AALQRDLPVSFRFQG 79


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRL 670
           +VLDMC+APG KT+ +   +        +G + AND + +RC  ++    RL
Sbjct: 308 RVLDMCSAPGGKTSHIAALM------KNSGVLFANDANFTRCRAIIGNLHRL 353


>Z77662-9|CAB01198.1|  456|Caenorhabditis elegans Hypothetical
           protein F47B8.10 protein.
          Length = 456

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 14  KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLP 193
           K+   ++E NP++K  G  R     IV  + +F   + M+     E W     T  +  P
Sbjct: 185 KQTEDDEEPNPEKKKKGGLRTIVGSIVIWHISFVYLFTMEMRTICETWVQLFLTDSKISP 244

Query: 194 TAFRITGSKGEL 229
            AF+IT   G L
Sbjct: 245 DAFQITYEIGGL 256


>AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1a protein.
          Length = 466

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 11  RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQW 157
           +K + K  EK  ++KP    +K YED   E A FE Y+      PE QW
Sbjct: 209 KKEEEKGSEKK-EKKPEPPKKKVYED-EDEKAPFEMYWDG---APEFQW 252


>AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1b protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 11  RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQW 157
           +K + K  EK  ++KP    +K YED   E A FE Y+      PE QW
Sbjct: 211 KKEEEKGSEKK-EKKPEPPKKKVYED-EDEKAPFEMYWDG---APEFQW 254


>Z66498-4|CAA91292.1|  142|Caenorhabditis elegans Hypothetical
           protein M195.4 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 8   QRKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEE--YYKMQKICPEEQWPVFMQTLK 181
           Q K D K++E   +EK  GD  K    +  E A   E    K QK  PE + P      K
Sbjct: 24  QVKNDVKKEEPKNEEKKPGDENKNPAAVGAEGAGAAEKPQDKSQKPFPEIKMPTESMKKK 83

Query: 182 EN 187
           +N
Sbjct: 84  KN 85


>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
            C10C5.6b protein.
          Length = 1782

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 11   RKRDRK-EQEKNPQEKPNGDNRKAYEDIV 94
            +K+DRK  +EK  ++K  G   K+ ED+V
Sbjct: 1304 QKQDRKMHEEKRARDKKEGKKEKSQEDVV 1332


>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
            C10C5.6a protein.
          Length = 1776

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 11   RKRDRK-EQEKNPQEKPNGDNRKAYEDIV 94
            +K+DRK  +EK  ++K  G   K+ ED+V
Sbjct: 1298 QKQDRKMHEEKRARDKKEGKKEKSQEDVV 1326


>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
            C10C5.6b protein.
          Length = 1782

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 11   RKRDRK-EQEKNPQEKPNGDNRKAYEDIV 94
            +K+DRK  +EK  ++K  G   K+ ED+V
Sbjct: 1304 QKQDRKMHEEKRARDKKEGKKEKSQEDVV 1332


>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
            C10C5.6a protein.
          Length = 1776

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 11   RKRDRK-EQEKNPQEKPNGDNRKAYEDIV 94
            +K+DRK  +EK  ++K  G   K+ ED+V
Sbjct: 1298 QKQDRKMHEEKRARDKKEGKKEKSQEDVV 1326


>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
          Length = 1800

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 11   RKRDRK-EQEKNPQEKPNGDNRKAYEDIV 94
            +K+DRK  +EK  ++K  G   K+ ED+V
Sbjct: 1322 QKQDRKMHEEKRARDKKEGKKEKSQEDVV 1350


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 88   YCSRKCRIRRIL*DAKNLPRRAVAGLHANSQRESTYGIPYHRI*GRT 228
            Y  R    R IL   +  P+R          +E TYG  Y+RI GRT
Sbjct: 1127 YVHRDIAARNILLTTRG-PQRVAKIADFGMAKEITYGTEYYRINGRT 1172


>AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical
           protein C35E7.9 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 14  KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQK 136
           K++ K++EK   EK  GD++K  E   +++ + +   K +K
Sbjct: 118 KKEEKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEK 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,309
Number of Sequences: 27780
Number of extensions: 327293
Number of successful extensions: 1061
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)