Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20649
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.23 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.91 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.91 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 488 GRYHRHLFLSRDSSC--CRLCYKKVMKPIQCLVTPDIHTGEP*LPCK 354
           G+ HRH+ +        C +C K  ++  Q ++    HTGE    CK
Sbjct: 161 GKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCK 207


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 11  RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPV 163
           R RDR E+E++ + K    N   Y++      + + YY +  I   EQ PV
Sbjct: 288 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINI---EQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 11  RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPV 163
           R RDR E+E++ + K    N   Y++      + + YY +  I   EQ PV
Sbjct: 299 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINI---EQIPV 346


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 327 VNLPWYPGGFAWQLRLTRMDIRRNEAL-YRLHNFLVAETAAGGVS 458
           ++LPW   G  W  R       R EAL +     ++  T  G +S
Sbjct: 185 IDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLS 229


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 327 VNLPWYPGGFAWQLRLTRMDIRRNEAL-YRLHNFLVAETAAGGVS 458
           ++LPW   G  W  R       R EAL +     ++  T  G +S
Sbjct: 132 IDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGNLS 176


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 451 ESRDKNRCR*YL 486
           E  DKN+CR YL
Sbjct: 567 EDADKNQCRHYL 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,086
Number of Sequences: 438
Number of extensions: 3903
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)