Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20649
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    77   1e-14
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P...    74   1e-13
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    29   2.2  
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P...    29   2.2  
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    28   5.2  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    28   5.2  
At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    28   6.8  
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    28   6.8  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    28   6.8  
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    28   6.8  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    28   6.8  
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR...    27   9.0  

>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +3

Query: 333 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKP 509
           LPWYP   AW    +R +IR+N+ L R H FL  ET AG ++RQE VSM+PP+ LDV P
Sbjct: 120 LPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLETEAGNMTRQESVSMVPPLFLDVHP 178



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
 Frame = +2

Query: 512 HKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVDNSRCYMLVHQAKR 667
           H VLDMCAAPGSKT QL+E +H  ++   +P G V+ANDVD  R  +L+HQ KR
Sbjct: 180 HFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVANDVDYKRSNLLIHQTKR 233



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +2

Query: 101 NAAFEEYYKMQKICPEEQWPVFMQTLKENLPTAFRI 208
           N  FEEYYK Q+I   ++W  FM+ L++ LP AFR+
Sbjct: 47  NLHFEEYYKEQRIVKAQEWDSFMEFLRKPLPAAFRV 82


>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 808

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/59 (50%), Positives = 38/59 (64%)
 Frame = +3

Query: 333 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKP 509
           LPWYP   AW    +R +IR+N+ L R H FL  E   G ++RQE VSM+PP+ LDV P
Sbjct: 127 LPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLENEVGNITRQEAVSMVPPLFLDVHP 185



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
 Frame = +2

Query: 512 HKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVDNSRCYMLVHQAKRL 670
           H VLDMCAAPGSKT QL+E +H  ++   +P G V+ANDVD  R  +L+HQ KR+
Sbjct: 187 HFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDVDFKRSNLLIHQTKRM 241



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = +2

Query: 14  KRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQKICPEEQWPVFMQTLKENLP 193
           KR + +   +  +    + +  +E IV  N  FEEYYK Q I   E+W +FM+ L++ LP
Sbjct: 25  KRPKSDASVDGSDNAVPEQKPTWEPIVTVNPNFEEYYKKQGIVKAEEWDLFMEILRKPLP 84

Query: 194 TAFRITGS 217
            AFR+  +
Sbjct: 85  AAFRVNSN 92


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 494 IRCETHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAK 664
           ++ +   +++D CAAPG KT  +   L         G + A DV+  R  +L   AK
Sbjct: 326 VKPQPGERIMDACAAPGGKTLFMASCLKGQ------GMIYAMDVNEGRLRILGETAK 376


>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 599

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKM 595
           ++LDMCAAPG KT   I  L  DE ++
Sbjct: 299 RILDMCAAPGGKTT-AIAILMNDEGEI 324


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAK 664
           +VLD C+APG+KT  L   +         G ++A +++  R   L H  K
Sbjct: 307 EVLDACSAPGNKTIHLAALMEGQ------GKIIACELNEERVKRLEHTIK 350


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 515 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAK 664
           +VLD C+APG+KT  L   +         G ++A +++  R   L H  K
Sbjct: 307 EVLDACSAPGNKTIHLAALMEGQ------GKIIACELNEERVKRLEHTIK 350


>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 14  KRDRKEQEKNPQEKPNGDNRKAYEDIVRE 100
           +RDR+E+E++   +P+ D R+  +D  R+
Sbjct: 3   ERDRRERERDKDREPDRDRRRGRDDRDRD 31


>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 652 YQHVASAVVYVIC-HHKTCRHFIFICM 575
           Y+H+   V ++IC HHK     I +C+
Sbjct: 284 YEHIGRCVCFIICKHHKIWEWLIKLCI 310


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 488 GRYHRHLFLSRDSSCCRLCYKKVMKP-IQCLVTPD 387
           G  H   +  R    CR C+ KV+KP + C  T D
Sbjct: 489 GHSHPLYYYRRQGKSCRSCHNKVVKPRVLCCDTCD 523


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 11  RKRDRKEQEKNPQEKPNGDNRKAYEDIVRENAAFEEYYKMQK 136
           R+RDR+E+++ P ++ N +  +  E   RE A  E+  + +K
Sbjct: 116 RERDRRERDREP-DRRNREKEREEEVKAREKARVEKLVEREK 156


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 580 CM*EFYELCGLRPRGSTHVKHLMVGFTSNTTGGIIDTCS 464
           C  EF+++C + PR  TH  HL    T  T    I+  S
Sbjct: 54  CDVEFHDICHVYPRKLTHPYHLQHPLTLTTQNTEIEIIS 92


>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1109

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 181 FESLHEDRPLLFWADFLHLIVFFEC 107
           +ESLHE+   LF    LH+ VFF C
Sbjct: 424 YESLHENEQSLF----LHIAVFFNC 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,973
Number of Sequences: 28952
Number of extensions: 297724
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)