Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20648
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 113 3e-26
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 113 3e-26
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 111 7e-26
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 103 2e-23
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 97 2e-21
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 57 3e-09
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 52 8e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 42 6e-05
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 7.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.8
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 113 bits (271), Expect = 3e-26
Identities = 52/83 (62%), Positives = 65/83 (78%)
Frame = +1
Query: 259 ERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQT 438
ERLIGDAAKNQ+ NP NT+FDAKRLIGR ++D VQ D+K +PFKV+EK+ KP +QV+
Sbjct: 46 ERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEF 105
Query: 439 SQGDKVFAPEEISAMVLTKMKET 507
K F PEEIS+MVL KM+E+
Sbjct: 106 KGETKTFTPEEISSMVLLKMRES 128
Score = 101 bits (243), Expect = 7e-23
Identities = 48/56 (85%), Positives = 53/56 (94%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDK 677
EA+LG KVT AVVTVPAYFND+QRQATKDAG I+GLNV+RIINEPTAAAIAYGLD+
Sbjct: 130 EAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDR 185
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 134 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFT 250
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT 43
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 113 bits (271), Expect = 3e-26
Identities = 53/60 (88%), Positives = 57/60 (95%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKEGE 689
EAYLGK VTHAVVTVPAYFNDAQRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK + E
Sbjct: 163 EAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDTE 222
Score = 104 bits (250), Expect = 1e-23
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +1
Query: 259 ERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQT 438
ERL+G+AAKNQ +NPENT+FD KRLIGR++ ++T+ D+K FPF +V ++P V+V
Sbjct: 79 ERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNV 138
Query: 439 SQGDKVFAPEEISAMVLTKMKET 507
K F PEEISAM+L+KMK+T
Sbjct: 139 GGKKKKFTPEEISAMILSKMKQT 161
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +2
Query: 125 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQ 253
GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTE 77
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 111 bits (268), Expect = 7e-26
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +1
Query: 259 ERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQT 438
ERLIGDAAKNQ+ NP NT+FDAKRLIGR++ D VQ D+K +PFKV+ K+ KP +QV+
Sbjct: 46 ERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEY 105
Query: 439 SQGDKVFAPEEISAMVLTKMKET 507
K F PEEIS+MVL KM+ET
Sbjct: 106 KGETKTFTPEEISSMVLMKMRET 128
Score = 104 bits (249), Expect = 1e-23
Identities = 51/61 (83%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDK-KEG 686
EAYLG KVT AVVTVPAYFND+QRQATKDAG I+GLNV+RIINEPTAAAIAYGLD+ +G
Sbjct: 130 EAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQG 189
Query: 687 E 689
E
Sbjct: 190 E 190
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 134 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFT 250
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT 43
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 103 bits (248), Expect = 2e-23
Identities = 49/82 (59%), Positives = 58/82 (70%)
Frame = +1
Query: 259 ERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQT 438
ERL+GDAAKNQ NP NTVFDAKRLIGR + D Q D+K +PFKV++ N P ++V
Sbjct: 50 ERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNY 109
Query: 439 SQGDKVFAPEEISAMVLTKMKE 504
K F +EISAMVLTKMKE
Sbjct: 110 LGEKKQFTAQEISAMVLTKMKE 131
Score = 93.1 bits (221), Expect = 3e-20
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKK 680
EA L K+V AV+TVPAYF+D+QR ATKDAG I+GLNV+RIINEPTAAAIAYGLD K
Sbjct: 134 EAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAK 190
Score = 65.3 bits (152), Expect = 8e-12
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +2
Query: 134 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQ 253
IGIDLGTTYSCV V++ VEII NDQG R TPS+VAFT+
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTE 48
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 97.5 bits (232), Expect = 2e-21
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +3
Query: 516 YLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKK 680
YLGK V +AVVTVPAYFND+QRQATK AG I+GLNV+R++NEPTAAA+AYGLDKK
Sbjct: 178 YLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK 232
Score = 75.4 bits (177), Expect = 7e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 256 GERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQ 435
GERL+G +AK Q NPENT F KRLIGR + + VQ D+K P+K+VE +S ++
Sbjct: 94 GERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE-HSNGDAWLE 152
Query: 436 TSQGDKVFAPEEISAMVLTKMKET 507
++G K ++P +I +L+KM+ET
Sbjct: 153 -ARG-KTYSPSQIGGFILSKMRET 174
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +2
Query: 125 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQ 253
G VIGIDLGTT SC+ + + ++IAN +G R TPS VAFT+
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTK 92
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKE 683
EA L V+ V+++PA+F D QR+A +A I+GLN +R++N+ AAA+ YG+ K +
Sbjct: 134 EAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTD 191
Score = 41.9 bits (94), Expect = 8e-05
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +1
Query: 244 LHSSGER--LIGDAAKNQLTTNPENTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEKNS 414
L S GER +G+AAK+ +N NTV KRL GR + D ++ + F K+ E +
Sbjct: 42 LVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDG 101
Query: 415 KPHVQVQTSQGDKVFAPEEISAMVLTKMK 501
+VQ + F+ ++ A TK+K
Sbjct: 102 FVGAKVQYLNEETAFSNIQLIAAYFTKIK 130
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 131 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAF 247
V+GID G + + + V +N +++I N+ NR TPS V++
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY 45
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 52.0 bits (119), Expect = 8e-08
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +3
Query: 510 EAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIA 662
E +LG KV V++VP YF DAQR+A + A +GL V+++I++P A +A
Sbjct: 156 EDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILA 206
Score = 39.9 bits (89), Expect = 3e-04
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 128 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAF 247
TVIGI G S + ++G+ +++AN++GNR PS +++
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSY 64
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 42.3 bits (95), Expect = 6e-05
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 525 KKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDK 677
+K+T V+TVP +FN+ QR +A I +V+ +I++ A AI Y L +
Sbjct: 158 EKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEYSLSR 208
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 256 GERLIGDAAKNQLTTNPENT 315
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 249 VKATYEGVMRFPWS 208
+K TYEG +R PWS
Sbjct: 284 MKLTYEGELRAPWS 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,829
Number of Sequences: 5004
Number of extensions: 53525
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -