Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20647
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              110   8e-25
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.4  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.4  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   9.5  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  110 bits (265), Expect = 8e-25
 Identities = 52/80 (65%), Positives = 67/80 (83%)
 Frame = +3

Query: 18  STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 197
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 198 MPKLKAFQKIQIRLVRELER 257
           +P+++AFQKIQ RLVRELE+
Sbjct: 68  VPQIRAFQKIQTRLVRELEK 87



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = +2

Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 358
           KKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 87  KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = +1

Query: 403 LPC*DRRQAHQGQVGRLTAH*GALRQKPTDYY*T*MDTFQSVYKKLTGREVTFEFP 570
           LP   R+  +Q Q  R  +H    +Q   D+    ++TF +VYKKLTG++V FEFP
Sbjct: 103 LPRPTRKSRNQKQK-RPRSHLDKTQQTTIDHK---LETFSTVYKKLTGKDVVFEFP 154


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 54  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 221
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 106  PTSKPNFGSFTLQKLKKLNYTIRS 177
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +1

Query: 85  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 183
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 495 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 388
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 556 SLRVPLASCIQTGRCPFMFNSSLLV 482
           S+RVPLA  +  G+C ++ +SS+ +
Sbjct: 216 SVRVPLAQALSGGQCAYVQSSSVFI 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,000,351
Number of Sequences: 59808
Number of extensions: 362071
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)