Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20647
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 93 1e-19
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 90 1e-18
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 90 1e-18
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 90 1e-18
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 90 1e-18
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.1
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.5
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 28 5.9
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHK 508
R +LDGS+++KV LD ++ E+K
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYK 166
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 197
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KAF+KI RLVRELE+
Sbjct: 67 FRLRKAFRKIHPRLVRELEK 86
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++T VY+KLTG++V FE+P
Sbjct: 167 LETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHK 508
R +LDG++++KV LD + E+K
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYK 166
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 197
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KAF+KI +RLVRELE+
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++T VY+KLTG++V FE+P
Sbjct: 167 LETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHK 508
R +LDG++++KV LD + E+K
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYK 166
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 197
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KAF+KI +RLVRELE+
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++T VY+KLTG++V FE+P
Sbjct: 167 LETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHK 508
R +LDG++++KV LD ++ E+K
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYK 166
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 197
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KA++KI +RLVRELE+
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 35.5 bits (78), Expect = 0.029
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++ F +VYKKLTG++V FEFP
Sbjct: 167 VEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHK 508
R +LDG++++KV LD ++ E+K
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYK 166
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 197
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KA++KI +RLVRELE+
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 35.5 bits (78), Expect = 0.029
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++ F +VYKKLTG++V FEFP
Sbjct: 167 VEAFSAVYKKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 337 QTKEATLKDIDLCVRCYPRGLG 402
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 337 QTKEATLKDIDLCVRCYPRGLG 402
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 456 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 355
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
family protein similar to phosphatidylinositolglycan
class N short form GB:BAA82620 [gi:5631308] [Mus
musculus]
Length = 921
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 516 GVHLCSIVVCWFLSKCTLMSCE-PSNLTLMRLPTISAGKT 400
G+ + + CWFLS TLM E P N L+ P + A T
Sbjct: 640 GIPVFVCISCWFLSVFTLMPAEIPDNNNLVS-PFLGANDT 678
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,880
Number of Sequences: 28952
Number of extensions: 259393
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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