Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20646
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 115 5e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 115 5e-27
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 88 9e-19
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 62 5e-11
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 54 2e-08
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 53 3e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.020
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 31 0.10
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.42
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.3
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 3.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 6.9
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 6.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 6.9
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 9.1
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.1
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 115 bits (277), Expect = 5e-27
Identities = 65/127 (51%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 433
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 434 ALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVEN 613
AL QTETVLRQA+ E +NK+DR YQ F R+VE+
Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVES 184
Query: 614 VNVIIAT 634
VNV+I+T
Sbjct: 185 VNVVIST 191
Score = 102 bits (245), Expect = 4e-23
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 231 KDEQDRCIPL 260
DEQ+R + +
Sbjct: 61 ADEQERGVTI 70
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 115 bits (277), Expect = 5e-27
Identities = 65/127 (51%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDG 433
IKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 70 IKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124
Query: 434 ALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVEN 613
AL QTETVLRQA+ E +NK+DR YQ F R+VE+
Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVES 184
Query: 614 VNVIIAT 634
VNV+I+T
Sbjct: 185 VNVVIST 191
Score = 102 bits (245), Expect = 4e-23
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 231 KDEQDRCIPL 260
DEQ+R + +
Sbjct: 61 ADEQERGVTI 70
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 88.2 bits (209), Expect = 9e-19
Identities = 53/126 (42%), Positives = 72/126 (57%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 70 MKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGA 121
Query: 437 LXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENV 616
QT TVLRQA + + +NKMDR + R+VE V
Sbjct: 122 FVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQV 181
Query: 617 NVIIAT 634
N +I T
Sbjct: 182 NAVIGT 187
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 69 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 248
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 249 CIPL 260
I +
Sbjct: 67 GITM 70
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 62.5 bits (145), Expect = 5e-11
Identities = 34/76 (44%), Positives = 42/76 (55%)
Frame = +2
Query: 320 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 499
N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+ QT TV RQ
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQM 193
Query: 500 IAEASSLFCFMNKMDR 547
F+NKMDR
Sbjct: 194 RRYNVPRISFVNKMDR 209
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 57 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/63 (42%), Positives = 35/63 (55%)
Frame = +2
Query: 359 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNK 538
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA F+NK
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKVIFVNK 154
Query: 539 MDR 547
MDR
Sbjct: 155 MDR 157
Score = 35.1 bits (77), Expect = 0.008
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 102 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCIPLN 263
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R I +N
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITIN 82
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 53.2 bits (122), Expect = 3e-08
Identities = 25/91 (27%), Positives = 40/91 (43%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
K F ID+PGHVDF EV A + ++DG + T +++ AI +
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVL 266
Query: 527 FMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 619
+NK+DR Y + +++ VN
Sbjct: 267 VLNKVDRLILELRLPPNDAYHKLRHVIDEVN 297
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
+ +L+NLID+PGHVDF +EV +L +G + QT + A ++ +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIP 181
Query: 527 FMNKMDRXXXXXXXXXXXXYQTF 595
+NK+D QTF
Sbjct: 182 VLNKVDLPTADVDRTLIQVQQTF 204
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 75 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 254
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D K E +R
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLD--KLEVERRR 104
Query: 255 PLNLRPSLCS 284
+ ++ CS
Sbjct: 105 GITVKAQTCS 114
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 31.5 bits (68), Expect = 0.10
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 93 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLN 263
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R I ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITIS 105
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT-ETVLRQAIAEASSLFCFMNKMD 544
+D PGH D+ + DGA+ QT E +L + ++NK+D
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.5 bits (63), Expect = 0.42
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = -2
Query: 525 QNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPF 346
Q + +S+++ ++ S + + +TTT +PS + S++ +S S+ S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 345 SLFSRWSGFVMNTKSFSSSSKNIEMAV 265
S S S ++ S SSSS + + +
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPI 210
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLRPSLCS 284
+++ I+H++ KS+ + V+ I + + G F+D + ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 285 SSLKRKI*YSSQTLTSVKRVRK 350
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGII 188
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 6.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 310
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 309 TKSFSSSSKN 280
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 351 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 256
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 107 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 12
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 102 SASCPSSHGSRLP*NSPF*MVYDFCSIK 19
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 136 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 243
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSL 167
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 30 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,375
Number of Sequences: 5004
Number of extensions: 50959
Number of successful extensions: 173
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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