Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20646
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   146   2e-35
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     43   2e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              41   7e-04
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.25 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.59 
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   4.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  146 bits (353), Expect = 2e-35
 Identities = 78/126 (61%), Positives = 87/126 (69%)
 Frame = +2

Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
           IKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 69  IKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGA 126

Query: 437 LXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENV 616
           L           QTETVLRQAIAE      FMNKMDR            YQTF RIVE++
Sbjct: 127 LVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESI 186

Query: 617 NVIIAT 634
           NVIIAT
Sbjct: 187 NVIIAT 192



 Score =  130 bits (314), Expect = 9e-31
 Identities = 61/69 (88%), Positives = 65/69 (94%)
 Frame = +3

Query: 54  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 233
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 234 DEQDRCIPL 260
           DEQDRCI +
Sbjct: 61  DEQDRCITI 69


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = +3

Query: 105  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 254
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R I
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGI 1989



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 368  IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMD 544
            + + GHVDFS EV+ +L    G +           QT +    A     ++   +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +2

Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 437 LXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDR 547
           +           QTE ++         +  F+NKMDR
Sbjct: 107 IVVIDVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 90  DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 203
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 26/78 (33%), Positives = 35/78 (44%)
 Frame = +2

Query: 401 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXX 580
           +V+ A+R+ DGAL           QT  VLRQA  E       +NK+DR           
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152

Query: 581 XYQTFQRIVENVNVIIAT 634
            +   Q+I+E VN I  T
Sbjct: 153 AFIHLQQILEQVNAITGT 170



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 395 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXX 574
           + +V+ A+R+ DGAL           QT  VLRQA  E       +NK+DR         
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSP 80

Query: 575 XXXYQTFQRIVENVNVII 628
              +   Q+I+E V+  +
Sbjct: 81  SEAFIHLQQILEQVSTAV 98


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 19/85 (22%), Positives = 40/85 (47%)
 Frame = +3

Query: 51  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 231 KDEQDRCIPLNLRPSLCSSSLKRKI 305
           +      +  NL  ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 476 TETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 631
           TE +L+ A+ E  ++   +NK+DR            Y   + +++ VN +++
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLS 221


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +2

Query: 338 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASS 517
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+     
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130

Query: 518 LFCFMNKMDR 547
           L   +NK+D+
Sbjct: 131 LIVAINKIDK 140



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 87  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 359 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNK 538
           I  +D+PGH  F++      +VTD  +           QT+  +  A A    +   +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199

Query: 539 MDR 547
           +D+
Sbjct: 200 IDK 202


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 225 TRKDEQDRCIPLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRK 350
           TRK +    IP ++R S   S +++ I  S  TL + K +RK
Sbjct: 11  TRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 301
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 300 FSSSSK 283
             SS K
Sbjct: 672 MGSSDK 677


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 432 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 310
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 489  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 349
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKST 385
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKST 385
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417


>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 433 SPCGC*LCVWCVCTNR 480
           SPC    C+WC C+ R
Sbjct: 18  SPCALYFCIWCECSKR 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,774,365
Number of Sequences: 59808
Number of extensions: 407663
Number of successful extensions: 1307
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)