Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20646
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 147 5e-36
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 144 4e-35
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 75 6e-14
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 75 6e-14
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 66 2e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 66 2e-11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 62 2e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 3e-08
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 51 8e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.006
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.006
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.006
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.042
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.042
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.22
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.22
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.30
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 32 0.39
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.39
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 32 0.39
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.52
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.91
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 0.91
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.6
AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical ... 29 2.1
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.8
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.7
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 28 6.4
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 27 8.4
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 8.4
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 147 bits (357), Expect = 5e-36
Identities = 85/134 (63%), Positives = 91/134 (67%), Gaps = 8/134 (5%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 412
IKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 413 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQT 592
ALRVTDGAL QTETVLRQAIAE FMNKMDR +QT
Sbjct: 130 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQT 189
Query: 593 FQRIVENVNVIIAT 634
FQRIVEN+NVIIAT
Sbjct: 190 FQRIVENINVIIAT 203
Score = 134 bits (324), Expect = 5e-32
Identities = 62/70 (88%), Positives = 68/70 (97%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 231 KDEQDRCIPL 260
KDEQ+RCI +
Sbjct: 61 KDEQERCITI 70
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 144 bits (350), Expect = 4e-35
Identities = 84/134 (62%), Positives = 90/134 (67%), Gaps = 8/134 (5%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 412
IKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 413 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQT 592
AL VTDGAL QTETVLRQAIAE FMNKMDR +QT
Sbjct: 130 ALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQT 189
Query: 593 FQRIVENVNVIIAT 634
FQRIVEN+NVIIAT
Sbjct: 190 FQRIVENINVIIAT 203
Score = 134 bits (324), Expect = 5e-32
Identities = 62/70 (88%), Positives = 68/70 (97%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 231 KDEQDRCIPL 260
KDEQ+RCI +
Sbjct: 61 KDEQERCITI 70
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 74.5 bits (175), Expect = 6e-14
Identities = 39/92 (42%), Positives = 51/92 (55%)
Frame = +2
Query: 356 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMN 535
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I ++ +N
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143
Query: 536 KMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 631
K+DR YQ R++E VN I+
Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +3
Query: 102 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R I +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 74.5 bits (175), Expect = 6e-14
Identities = 39/92 (42%), Positives = 51/92 (55%)
Frame = +2
Query: 356 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMN 535
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I ++ +N
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143
Query: 536 KMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 631
K+DR YQ R++E VN I+
Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +3
Query: 102 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R I +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/109 (33%), Positives = 57/109 (52%)
Frame = +2
Query: 308 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 487
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 488 LRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 634
+R AI E ++ ++K+DR Y + I++ VN I++T
Sbjct: 246 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILST 294
Score = 34.7 bits (76), Expect = 0.056
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 84 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCIPL 260
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 261 NLRP 272
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/109 (33%), Positives = 57/109 (52%)
Frame = +2
Query: 308 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 487
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 488 LRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 634
+R AI E ++ ++K+DR Y + I++ VN I++T
Sbjct: 121 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILST 169
Score = 33.9 bits (74), Expect = 0.097
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCIPLN 263
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 264 LRP 272
+P
Sbjct: 61 SQP 63
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/66 (50%), Positives = 38/66 (57%)
Frame = +2
Query: 350 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCF 529
G IN+ID+PGHVDF+ EV ALRV DGA+ QT TV RQ CF
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICF 170
Query: 530 MNKMDR 547
+NKMDR
Sbjct: 171 VNKMDR 176
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGII 188
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = +2
Query: 251 HPIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 430
H K ++ F ++E + + + + KG INLID+PGHVDF EV +RV D
Sbjct: 57 HVDKGNTVTDFLDIERERGITVQSAAVN-LDWKGHRINLIDTPGHVDFRVEVERCVRVLD 115
Query: 431 GALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDR 547
G + QT TV RQ+ F+NKMD+
Sbjct: 116 GIVVVIDGSAGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCI 254
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R I
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGI 76
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
+G+L+NLID+PGHVDFS+EV+ +L V DG L QT A + +
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANFWLAFEKNIQIIP 159
Query: 527 FMNKMD 544
+NK+D
Sbjct: 160 VINKID 165
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 254
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R I
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGI 88
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLN 263
N+ I HVDHGK+TLT ++ GA+ + D +E+ R I +N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVL---RQAIAEASSLFCFMNK 538
ID PGH D+ + +GA+ QT L RQ ++ FMNK
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVGVPLDNIVVFMNK 176
Query: 539 MD 544
+D
Sbjct: 177 VD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLN 263
N+ I HVDHGK+TLT ++ GA+ + D +E+ R I +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVL---RQAIAEASSLFCFMNK 538
ID PGH D+ + +GA+ QT L RQ ++ FMNK
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVGVPLDNIVVFMNK 177
Query: 539 MD 544
+D
Sbjct: 178 VD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLN 263
N+ I HVDHGK+TLT ++ GA+ + D +E+ R I +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVL---RQAIAEASSLFCFMNK 538
ID PGH D+ + +GA+ QT L RQ ++ FMNK
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVGVPLDNIVVFMNK 177
Query: 539 MD 544
+D
Sbjct: 178 VD 179
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.042
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLRPSLCSSS 290
N+ I H+DHGK+TLT ++ A+ + D K+E+ R I +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 291 LKR 299
L+R
Sbjct: 107 LRR 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.042
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLRPSLCSSS 290
N+ I H+DHGK+TLT ++ A+ + D K+E+ R I +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 291 LKR 299
L+R
Sbjct: 107 LRR 109
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -2
Query: 507 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 328
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 327 SGFVMNTK 304
V K
Sbjct: 751 KAIVNKFK 758
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 117 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLRPSLCSSSLK 296
+++ D GK+TL ++L S AG G A +F TR+ C +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 297 RKI*Y 311
R + Y
Sbjct: 111 RSLLY 115
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +2
Query: 350 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCF 529
GFLI ID+PGH FS+ T + D A+ QT L+ I +
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 530 MNKMDR 547
+NK+DR
Sbjct: 608 LNKIDR 613
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +3
Query: 36 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 212
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 213 RFTDTRKDEQDRCIPLNLRPSLCSSSLKRKI*YSSQTLTSV 335
R +QD ++L L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 90 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 349
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 352
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 466 HTRHTVNNHKGSISDTECSCYFRREINV 383
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 459 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 364
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical
protein H22D07.1 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = -2
Query: 531 MKQNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 352
+KQ++ S R S +TQSTTTR+P TRS + +E+S S +
Sbjct: 262 LKQDKASTSCFNFRVKSSDIMTIDETQSTTTRSP--TRSTYLLQQEESFALRSSSSYDFE 319
Query: 351 PFSLFSRWSGFVMNTKSFSSSSKNIEMAV 265
+ G + + S SK MAV
Sbjct: 320 SHNSHPTRQGSIRSRASTGGGSKFGAMAV 348
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 379
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 138 DRRGRSQTCCGYSASCPSSHG 76
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 138 DRRGRSQTCCGYSASCPSSHG 76
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 53 GEFHGRRDPWDDGQEAEYPQHVCDR 127
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 53 GEFHGRRDPWDDGQEAEYPQHVCDR 127
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 471 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 337
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 400
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 400
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = -2
Query: 462 PDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSSSK 283
P TQSTTT + T + ++ S K C +K ++ F+R S K SS ++
Sbjct: 413 PSTQSTTTMKSTTTATTSM-STTKKVCAKSDLK-CANGWTSFNRTSTNPFCFKVISSYNQ 470
Query: 282 NIEMAVDLMGCNG 244
+ E + L +G
Sbjct: 471 SYEQSEALCAASG 483
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 492 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 372 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLM 256
S+ L+ PF L +R +G+ + FSS S + MAV ++
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVL 106
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 349
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 245
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 245
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 462 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 289
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 481 FGLYTHTRHTVNNHKGSISDTECS 410
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 481 FGLYTHTRHTVNNHKGSISDTECS 410
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 462 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 289
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 465 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 289
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 288 SKN 280
S N
Sbjct: 216 SGN 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,317
Number of Sequences: 27780
Number of extensions: 298612
Number of successful extensions: 1191
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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