Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20646
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 118 4e-27
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 71 5e-13
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 67 1e-11
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 63 2e-10
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 63 2e-10
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 59 2e-09
At5g13650.2 68418.m01585 elongation factor family protein contai... 56 3e-08
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 56 3e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 56 3e-08
At5g13650.1 68418.m01584 elongation factor family protein contai... 54 1e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 51 7e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 48 5e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 47 1e-05
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 35 0.052
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 35 0.052
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 34 0.068
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 33 0.21
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.28
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.28
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.28
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.28
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 1.5
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 1.5
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 2.6
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 3.4
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 28 4.5
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 28 5.9
At3g28790.1 68416.m03593 expressed protein 27 7.8
At1g12080.2 68414.m01397 expressed protein 27 7.8
At1g12080.1 68414.m01396 expressed protein 27 7.8
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 118 bits (283), Expect = 4e-27
Identities = 65/126 (51%), Positives = 80/126 (63%)
Frame = +2
Query: 257 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 436
IKST IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TDGA
Sbjct: 70 IKSTGISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITDGA 125
Query: 437 LXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENV 616
L QTETVLRQA+ E +NKMDR YQTF R++EN
Sbjct: 126 LVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENA 185
Query: 617 NVIIAT 634
NVI+AT
Sbjct: 186 NVIMAT 191
Score = 99 bits (238), Expect = 1e-21
Identities = 49/70 (70%), Positives = 55/70 (78%)
Frame = +3
Query: 51 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 230
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 231 KDEQDRCIPL 260
DE +R I +
Sbjct: 61 ADEAERGITI 70
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 71.3 bits (167), Expect = 5e-13
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 248 LHPIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 424
LHP + + L+E+ IT + K + +NLIDSPGH+DF SEV+ A R+
Sbjct: 38 LHPRLAGKLRFMDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARL 97
Query: 425 TDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDRXXXXXXXXXXXXYQTFQRI 604
+DGAL QT VLRQA E + +NK+DR Y RI
Sbjct: 98 SDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRI 157
Query: 605 VENVNVIIA 631
V VN I++
Sbjct: 158 VHEVNGIVS 166
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ R I +
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITM 62
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 66.9 bits (156), Expect = 1e-11
Identities = 40/96 (41%), Positives = 53/96 (55%)
Frame = +2
Query: 260 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 439
+ TA + E E++ + IT+ +K IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 131 EGTATMDWMEQEQERGITITSAATTTFWDK-HRINIIDTPGHVDFTLEVERALRVLDGAI 189
Query: 440 XXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDR 547
Q+ETV RQA CF+NKMDR
Sbjct: 190 CLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 225
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 99 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDRCIPL 260
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R I +
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQERGITI 149
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/95 (31%), Positives = 48/95 (50%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEAS 514
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 515 SLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 619
+ +NK+DR Y + +E +N
Sbjct: 263 PIVVVINKVDRLITELKLPPRDAYYKLRHTIEVIN 297
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 252 IPLNLRP 272
I + P
Sbjct: 190 ISIKAVP 196
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/95 (31%), Positives = 48/95 (50%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEAS 514
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 515 SLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 619
+ +NK+DR Y + +E +N
Sbjct: 263 PIVVVINKVDRLITELKLPPRDAYYKLRHTIEVIN 297
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 252 IPLNLRP 272
I + P
Sbjct: 190 ISIKAVP 196
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEAS 514
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R AI +
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHL 248
Query: 515 SLFCFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 619
+ +NK+DR Y + +E +N
Sbjct: 249 PIVVVINKVDRLITELKLPPRDAYYKLRYTIEVIN 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 81 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 251
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQERN 175
Query: 252 IPLNLRP 272
I + P
Sbjct: 176 ISIKAVP 182
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/73 (32%), Positives = 46/73 (63%)
Frame = +3
Query: 42 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 221
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 222 DTRKDEQDRCIPL 260
D+ E++R I +
Sbjct: 122 DSNDLERERGITI 134
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
K +N+ID+PGH DF EV L + DG L QT VL++A+ ++
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVV 203
Query: 527 FMNKMDR 547
+NK+DR
Sbjct: 204 VVNKIDR 210
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVA 190
Query: 527 FMNKMDR 547
F+NK+DR
Sbjct: 191 FINKLDR 197
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/67 (43%), Positives = 38/67 (56%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVA 190
Query: 527 FMNKMDR 547
F+NK+DR
Sbjct: 191 FINKLDR 197
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 188
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R I +
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITI 133
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +2
Query: 347 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFC 526
K +N+ID+PGH DF EV L + DG L QT VL++A+ ++
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVV 202
Query: 527 FMNKMDR 547
+NK+DR
Sbjct: 203 VVNKIDR 209
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 50.8 bits (116), Expect = 7e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 102 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPLNLR 269
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R I + L+
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIKLQ 139
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +2
Query: 353 FLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFM 532
F +NLID+PGHVDFS EV+ +L +GAL QT + A+ + +
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVL 211
Query: 533 NKMD 544
NK+D
Sbjct: 212 NKID 215
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 335 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEAS 514
++ G+L+NLID+PGHVDFS EV+ +L GAL QT A
Sbjct: 129 DQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQGVQAQTVANFYLAFEANL 188
Query: 515 SLFCFMNKMDR 547
++ +NK+D+
Sbjct: 189 TIVPVINKIDQ 199
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +3
Query: 105 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 242
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D + E+
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLDKLQRER 110
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 57 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 236
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 237 EQDRCIPLN 263
E+ R I +N
Sbjct: 123 ERARGITIN 131
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT-ETVLRQAIAEASSLFCFMNKMD 544
+D PGH D+ + DGA+ QT E +L + F+NK D
Sbjct: 147 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPDMVVFLNKED 206
Query: 545 R 547
+
Sbjct: 207 Q 207
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 528 KQNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
K ++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 369 KDAKVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 528 KQNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
K ++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 630 KDAKVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 34.3 bits (75), Expect = 0.068
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT-ETVLRQAIAEASSLFCFMNKMD 544
+D PGH D+ + DG + QT E +L SL CF+NK+D
Sbjct: 135 VDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 194
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCIPL 260
N+ I HVDHGK+TLT ++ A+A D +E+ R I +
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI 118
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 368 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLFCFMNKMDR 547
+D+PGH F + RVTD A+ QT + A A A + +NK+D+
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINKIDK 616
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 215
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 87 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 182
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 124 SPTSITASQPSRTRWFPRPVSLLVRE 201
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 111 NMSVIAHVDHGKSTLTDSLVSKAGIIA 191
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 124 SPTSITASQPSRTRWFPRPVSLLVRE 201
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 114 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 206
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +2
Query: 344 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAEASSLF 523
+ G I +D+PGH FS VTD + QT + A + +
Sbjct: 265 DSGTSITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDGVMPQTLEAIAHARSANVPVV 324
Query: 524 CFMNKMDR 547
+NK D+
Sbjct: 325 VAINKCDK 332
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 508 LGNSLTQYCFGLYTHTRHTVNNHKGSISDTECSCYFRREIN 386
L N + C Y HTV HKGS D +C ++RE N
Sbjct: 299 LSNRSSDRCRSKY-QLIHTVRTHKGS-DDNAFNCVYQREDN 337
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 540 ILFMKQNRLDASAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 388
++ M AS+ ST T T STT APS T+S AV + +
Sbjct: 70 LVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 7.8
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -2
Query: 489 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 310
ST + T TP T + +T APS T +A TSE+ S + K S S SG V
Sbjct: 294 STPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSESASMKKESNSKSES-ESAASGSVSK 351
Query: 309 TKSFSSSS 286
TK + S
Sbjct: 352 TKETNKGS 359
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 477 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
V T TP + +A VT + AV EEK T
Sbjct: 85 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 115
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 477 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 385
V T TP + +A VT + AV EEK T
Sbjct: 51 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,078
Number of Sequences: 28952
Number of extensions: 275642
Number of successful extensions: 852
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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