Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20645
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    57   2e-09
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   4.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   7.9  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 266 GRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDE 394
           GR I  +L K+++ E +WP LT +K + HWL+ DF+RW DEDE
Sbjct: 80  GRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDEDE 122


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 554  NFWLFNC*PTVYSISVNLLLHQSSNHPFHY 465
            + W      ++Y ++V L+LH + N  FHY
Sbjct: 1013 DMWKMIICQSMYQLAVTLVLHFAGNSIFHY 1042


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 254  GVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDN 415
            G  KG   ++L   E  D+P        +K H     +  RW ++D  G DL N
Sbjct: 1827 GGAKGWFSKLLRRDESKDQPTVYKAKLGEKSHLHYDKELKRWVNDD--GSDLSN 1878


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 205 CIFFSGSHIPLNVIDLGSMFI 143
           CIFFS + +P  +I L S F+
Sbjct: 329 CIFFSSTKVPCQLIRLPSDFV 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,094
Number of Sequences: 5004
Number of extensions: 51633
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)