Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20645
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646... 46 2e-05
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 35 0.071
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 0.88
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 29 3.5
09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971 29 4.7
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240... 29 4.7
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 28 6.2
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 28 6.2
01_06_0075 - 26201231-26201422,26201697-26201778,26201868-262019... 28 6.2
01_03_0003 + 11509530-11512772 28 8.2
>03_05_0537 +
25363026-25363217,25363672-25363828,25364660-25364694,
25364803-25364848,25365277-25365311
Length = 154
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +2
Query: 272 LIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGD---DLDNMNDMFSDKD 442
L ++ + +K + +W L ++KH ++KVD+N+W DEDE D D D+ D +D+D
Sbjct: 74 LRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKWCDEDEESDAPVDSDDAFDEGNDRD 133
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 72 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 248
P V WAQR+ +I+LT ++ + + + EP+ + F + + + L+ V P+
Sbjct: 7 PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEG 65
Query: 249 SMGLTKEG 272
S TK G
Sbjct: 66 SKTKTKMG 73
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 296 EKVDEPYWPSLTSDKKKHH-WLKVDFNRWQDEDE 394
+K + +WP L + K +LKVD+++WQDED+
Sbjct: 80 KKAESKWWPRLLKKEGKPPVFLKVDWDKWQDEDD 113
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 72 PSVSWAQRNARIFLTFNV-ECEKPDINIEPK-SITFKGICEPEKKMHEVLIPLYAEVDPK 245
PS WAQR+ ++FLT + + +N++P+ F + +E+ + L+ V+ +
Sbjct: 5 PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64
Query: 246 KS 251
+S
Sbjct: 65 ES 66
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 293 KEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMN 448
KEK DE L ++KK K++ ++E+E+G++ D ND +K N
Sbjct: 251 KEKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDNEIEKVKN 302
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 377 WQDEDESGDDLDNMNDMFSDKDMN 448
W D+DES D DN +D SD+ ++
Sbjct: 374 WHDDDESNDTADNWHDDNSDQPID 397
>09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971
Length = 298
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 563 LSICNYGQYILCFLIRNKKAPSLTVVVKL 649
+++ N +YI C L+RN+K P +++ L
Sbjct: 147 IAVRNGNKYIFCILLRNRKNPEKLILLAL 175
>06_01_0333 +
2404459-2404857,2404917-2405009,2405428-2405522,
2406146-2406219,2406307-2406395,2406745-2406858
Length = 287
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 66 TPPSVSWAQRNARIFLTFNVECEKPDINIEPKSITF 173
+PP+ Q+N R+F T+++ K ++++P+ F
Sbjct: 79 SPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQF 114
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 326 MKASMAHQPFLSPIVPQLTFLC*PHALFRINF 231
MKAS F+S VP++ F+ P+ +F I+F
Sbjct: 758 MKASRKGLGFISVAVPEVAFMSGPNGIFFISF 789
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 NKGRLIEVLLAKEKVDEPYWPSLTSDK-KKHHWLKVDFNRWQDEDESGDDLDNMN 421
N+G +EVL A++ D P W T+D +++ WL + N + +GD L M+
Sbjct: 161 NEG-FVEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMD 214
>01_06_0075 -
26201231-26201422,26201697-26201778,26201868-26201978,
26202059-26202310,26202396-26204629,26204720-26204917
Length = 1022
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 326 MKASMAHQPFLSPIVPQLTFLC*PHALFRINF 231
MKAS F+S VP+ TF+ P+ +F I+F
Sbjct: 758 MKASRKGLGFISVAVPEGTFMSGPNGIFFISF 789
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 199 FFSGSHIP-LNVIDLGSMFISGFSHSTLNVKKIR 101
FF+ H+ L V++LGS +S HS N+K++R
Sbjct: 608 FFTKPHMRFLRVLELGSCRLSELPHSVGNLKQLR 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,536
Number of Sequences: 37544
Number of extensions: 276973
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -