Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20645
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043) 42 6e-04
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 30 2.1
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_31159| Best HMM Match : Pox_C7_F8A (HMM E-Value=1.2) 29 4.8
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 28 8.4
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 28 8.4
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56) 28 8.4
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 28 8.4
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 8.4
>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = +2
Query: 269 RLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDD 406
R +E +AK+K E +W L +K+ +WLK++F+RW++ED++ D+
Sbjct: 37 RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRWKNEDDTEDE 82
>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
Length = 701
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2
Query: 263 KGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDD 406
KG I VLL K + DE WP L K+K+ ++ +DF+RW+ S +D
Sbjct: 603 KGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFDRWEVWSSSEED 648
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 34.7 bits (76), Expect = 0.073
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 281 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSD 436
VLL ++ E + DK KH +++ D + DED+ DDL+ D S+
Sbjct: 14 VLLLLQEFSEAKFKRRPIDKSKHDYIQTDTEKKVDEDDDTDDLETEQDENSE 65
>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 281 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 424
VLL ++ E + D+ KH +++ D + DED+ DDL+ D
Sbjct: 14 VLLLLQEFSEAKFRRRPIDESKHDYIQTDTEKEVDEDDDDDDLETEQD 61
>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 174 KGICEPEKKMHEVLIPLYAEVDPKKSMGLTKEG*LRYYWRKKRLMSHTGLH*QVIKRNTI 353
+ +C PE+K + L + PKK + + LR+ W + R TG + ++RN +
Sbjct: 333 ENVCRPERK-ETLFDDLDDDPMPKKKARMARREQLRHEWAESRRKGRTGRVEEDLRRNEV 391
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 281 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 424
VLL ++ E + DK K ++++D + DED+ DDL+ D
Sbjct: 14 VLLLLQEFSEGKFKRRPIDKSKLDYIQMDTEKKVDEDDDTDDLETEQD 61
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 365 DFNRWQDEDESGDDLDNMNDMFSDKDMN 448
D N D+++ DD D MNDM D DMN
Sbjct: 183 DDNDMNDDNDMNDDND-MNDMNDDNDMN 209
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 365 DFNRWQDEDESGD--DLDNMNDMFSDKDMN 448
D N D+++ D D+D+ NDM D DMN
Sbjct: 207 DMNDMNDDNDMNDMNDMDDDNDMNDDNDMN 236
>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1784
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 35 P*VAKHDFASNSTISIL-GSAKRSYLFNIQC 124
P V K F N+T +L G+A SY+ NI+C
Sbjct: 611 PYVIKTGFPGNATAKLLPGNASLSYMMNIEC 641
>SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 365 DFNRWQDEDESGDDLDNMNDMFSDKDMN 448
D N D+++ DD D MNDM D DMN
Sbjct: 32 DDNDMNDDNDMNDDND-MNDMNDDNDMN 58
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 365 DFNRWQDEDESGD--DLDNMNDMFSDKDMN 448
D N D+++ D D+D+ NDM D DMN
Sbjct: 56 DMNDMNDDNDMNDMNDMDDDNDMNDDNDMN 85
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 383 DEDESGDDLDNMNDMFSDKDMN 448
++D +D+++MNDM D DMN
Sbjct: 91 NDDNDMNDMNDMNDMNDDNDMN 112
>SB_31159| Best HMM Match : Pox_C7_F8A (HMM E-Value=1.2)
Length = 429
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 308 EPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 424
EP S S+K+++ +L RW+D+D + LD ND
Sbjct: 111 EPVASSFLSEKEENSFLTEKHVRWEDQDLESEKLDE-ND 148
>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
Length = 492
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 HGVNKGRLIEVLLAKEKVDEPYWPSLTSD-KKKHHWLKVDFNRWQDEDESGDDLDNMNDM 427
+G+ + +LL + D+ P D K + H K + +D D DD ++M+D
Sbjct: 214 NGMRYSEIDLILLKADNEDDEAVPDSEQDIKPRFHKSKTHSQQHEDGDGESDDGEDMDDD 273
Query: 428 FSDKDMNIQ 454
+ D N++
Sbjct: 274 DALSDWNLR 282
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 260 NKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDK 439
N+G EV A ++ +T +K LK NRW + ++ +L ++N+ F +
Sbjct: 584 NEGPAQEVRDALRRLSSTRSQIITVLSEKEQRLKYGLNRWSEFEKLYSELRHINEWFESR 643
Query: 440 D 442
+
Sbjct: 644 E 644
>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
Length = 579
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 NKGRLIE-VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFN 373
NK RL +LA+ +VD Y+P L S +++VDFN
Sbjct: 382 NKFRLRHHKVLARNEVDGFYYPGLVSKCINSRYVEVDFN 420
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 347 HHWLKVDFNRWQDEDESGDDLDNMND 424
HH V N +D+++ DD++N ND
Sbjct: 522 HHQAAVKVNNNKDDNDDDDDINNSND 547
>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1554
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 266 GRLIEVLLAKEKVDEPYWPSLTSDKKKHHWL 358
G L+ L A+ +V +P W T+D +K++ L
Sbjct: 915 GNLLSFLRARREVYQPTWTKTTNDPEKNYTL 945
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,330
Number of Sequences: 59808
Number of extensions: 347763
Number of successful extensions: 1194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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