Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20645
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81482-1|CAB03953.2|  208|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +2

Query: 248 EHGVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLD 412
           +H  +  R++E+ + K+     +WP L  +K K HWLKVDF +W+DEDE  +  D
Sbjct: 64  KHTGSSTRVVEITVQKKT--PAWWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAED 116



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 72  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDP 242
           P+V WAQR + ++LT  V E +  ++  E   + F+G  + +K  +E  +  + E+DP
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDP 60


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 257 VNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSD 436
           +N G +I+ + A  K+ +     + +  K H    VD + W DE    D++D +N+M+ D
Sbjct: 120 INGGAVIDPVDAGNKIGDAL-KQIETSVKAH---TVDKSNWCDEWIVDDNMDEINEMYDD 175


>Z81482-1|CAB03953.2|  208|Caenorhabditis elegans Hypothetical
           protein C40H5.2 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 281 VLLAKEK--VDEPYWPSLTSDKKKHHWLKVD--FNRWQDEDESGDDLDNMN 421
           V + KE+  + + +W S +S+K   +    +  +NRW +ED+  DDL   N
Sbjct: 123 VRMRKERRGLTQVFWESASSNKMGFYISVPNKHYNRWAEEDDMFDDLPTEN 173


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 148 TLNLNRLRSKEYANQKKKC 204
           T+N+++L  KEY   KKKC
Sbjct: 769 TVNVDKLSDKEYKEYKKKC 787


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,691
Number of Sequences: 27780
Number of extensions: 279376
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)