Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20645
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02450.1 68417.m00332 glycine-rich protein similar to several... 39 0.003
At3g03773.1 68416.m00384 expressed protein 36 0.020
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 29 2.2
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 29 2.2
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 28 5.2
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro... 28 6.8
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 28 6.8
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 28 6.8
At1g60410.1 68414.m06801 F-box family protein contains F-box dom... 28 6.8
At1g57590.1 68414.m06535 pectinacetylesterase, putative similar ... 28 6.8
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 27 9.0
>At4g02450.1 68417.m00332 glycine-rich protein similar to several
proteins containing a tandem repeat region such as
Plasmodium falciparum GGM tandem repeat protein
(GB:U27807)
Length = 241
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 296 EKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESG 400
EK + W L KK H++KVD+++W DED+ G
Sbjct: 80 EKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDEG 114
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 72 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSI-TFKGICEPEKKMHEVLIPLYAEVDPK 245
P V WA+ +IFLT + + + +N++P+ + F PE ++E+ + L +V+ +
Sbjct: 5 PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64
Query: 246 KS 251
+S
Sbjct: 65 ES 66
>At3g03773.1 68416.m00384 expressed protein
Length = 150
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 EHGVNKGRLIEVLLAKEKVDEPYWPSLT-SDKKKHHWLKVDFNRWQDEDE 394
E+ N G L ++ + +K + +W L S++K ++KVD+N+W DEDE
Sbjct: 63 EYRKNVG-LRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 111
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 72 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEV--DP 242
P V WAQR+ +++LT + + + + EP+ + + + E + LY ++ +
Sbjct: 5 PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64
Query: 243 KKSMGL 260
+K++GL
Sbjct: 65 RKNVGL 70
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 287 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 424
L KE K+ W S+T D+KK + K +DED E DD D+ D
Sbjct: 88 LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 138
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 287 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 424
L KE K+ W S+T D+KK + K +DED E DD D+ D
Sbjct: 89 LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 139
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 251 HGVNKGRLIEVLLAKEKVDEPYW-PSLTSDKKKHHWLKVD-FNRWQDEDESGDDLDNMND 424
HG +K ++ + K DEP+ S+ D W + R DEDE DD N N
Sbjct: 360 HGGHKAKISDFAWNK---DEPWVISSVAEDNSLQVWQMAESIYREDDEDEDDDDEGNQNA 416
Query: 425 MFSDKD 442
S+++
Sbjct: 417 QHSNEN 422
>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 276
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 138 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 248
PD+ E + K + + E K +E ++P++ +DP++
Sbjct: 149 PDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQR 185
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 503 LLLHQSSNHPFHYLHQ----IECSYLCPKTCHSYCLNRLHF 393
LL+HQS++HP H+ HQ I S + + +N LHF
Sbjct: 249 LLIHQSASHPHHH-HQTQPTINVSSSSSSSHNHNIINSLHF 288
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 129 CEKPDINIEPKSITFKGICEPEKKMHEVLIPL 224
CEKP +E G CE +K+ ++++P+
Sbjct: 852 CEKPKQQVESVGDCKSGHCEKKKQAEDIVVPV 883
>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
Pfam:PF00646
Length = 406
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 126 ECEKPDINIEPKSITFKGICE--PEK-KMHEV 212
EC+ P + I+ S+ F IC+ PE K+H +
Sbjct: 223 ECDNPKVEIDSPSLEFMSICDKKPESLKIHRI 254
>At1g57590.1 68414.m06535 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 423
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 455 IECSYLCPKTCHSYCLNR 402
I+C+Y C KTCH+ R
Sbjct: 406 IDCAYPCDKTCHNLVFRR 423
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 335 DKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKD 442
D+KKH K D + D+D+S DD D+ +D D D
Sbjct: 112 DEKKHKDKKKDGH--NDDDDSDDDTDDDDDDDDDDD 145
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,576
Number of Sequences: 28952
Number of extensions: 253422
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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