Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20641
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    55   9e-09
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    35   0.010
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    29   0.64 
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   6.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.9  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   7.9  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 52  YDAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 231
           Y+A+A  F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL SL FQ+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60

Query: 232 ITRIVTAV 255
           +   ++ +
Sbjct: 61  VQHRISTL 68



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 255 DSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 404
           D+QP    G V++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 69  DAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +3

Query: 198 YGKIK*FDFSKNH*NSNCCDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSF 377
           + KI   DF       +  DS    +GG++I VLG +         + QTF L    + +
Sbjct: 66  HNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGY 125

Query: 378 YVQHDIFRLGIHDI 419
           +V +DIFR    D+
Sbjct: 126 FVLNDIFRFLREDV 139


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 507 HWYTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVIEQGNL 626
           HW + +   I F KEF  L  RD   +  +I ++  QGN+
Sbjct: 205 HWNSFFAHFIAFGKEFQLLDKRDTAPLKDLIVVLENQGNI 244


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 657 FRCNENQILIL-DYPVRSLNRSLS*FHNRLV 568
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 43  NPQYDAIAK-GFVQQYYTLFDDPAQRANLVNMYNVETSFMTFE-GVQLQGAVKIMEKLNS 216
           N  YD   + GF+Q+ YT+FD  + +    N  ++E +  T+  G+ + GA  +    NS
Sbjct: 209 NVAYDWSQRIGFIQEDYTVFDGSSIKD---NCSSIEITQWTYNIGLYMAGAAYMYNYTNS 265

Query: 217 LTFQ 228
             ++
Sbjct: 266 TVWK 269


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 503  LTLVHIIFFLYLFRQRIYEIERTRRL*NYDN 595
            L L+  +FFLYL+  R Y +  +R L   DN
Sbjct: 1047 LLLIVPLFFLYLY-NRAYYVRTSRELKRLDN 1076


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 412 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLI 287
           W  + K  C +   SP G N+++ +YR    +  F++P   I
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAI 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,557
Number of Sequences: 5004
Number of extensions: 60961
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)