Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20641
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       51   1e-06
01_06_0963 + 33441731-33442096,33442175-33442270                       47   1e-05
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    35   0.071
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    34   0.12 
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    29   4.7  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/67 (43%), Positives = 37/67 (55%)
 Frame = +1

Query: 55  DAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 234
           DA+AK FV+ YY  FD    R  LV++Y  + S +TFEG Q  GA  I  KL SL F + 
Sbjct: 4   DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 235 TRIVTAV 255
              +  V
Sbjct: 61  HHDINTV 67



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +3

Query: 201 GKIK*FDFSKNH*NSNCCDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDS 374
           GK+    F++ H + N  D QP    GG+L+ V G L+   D  P  + Q F L P G +
Sbjct: 50  GKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGN 109

Query: 375 FYVQHDIFRL 404
           FYVQ+D+FRL
Sbjct: 110 FYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/69 (39%), Positives = 38/69 (55%)
 Frame = +1

Query: 49  QYDAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQ 228
           Q D +A+ FV+ YY  FD    RA L  +Y  +TS ++FEG  + GA +I  KL  L F+
Sbjct: 24  QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFE 80

Query: 229 KITRIVTAV 255
           +    V  V
Sbjct: 81  QCRHAVCTV 89


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           D+Q    GGV + V G L   +D    + Q+F L P    ++V +DI R
Sbjct: 90  DAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           DSQ    GGV + V G L   +     + Q+F L P    ++V +D+FR
Sbjct: 82  DSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 651 CNENQILILDYPVRSLNRSLS*FHNRLVLSIS*I--L*RNRYKKNIMC-TNVKNSDSTVV 481
           C EN IL+++YP+R ++ S+     +L   +  +  L R  Y+  + C T    S + V+
Sbjct: 345 CRENNILMVNYPIREVD-SMD-LRKKLSFCVGLLLRLIRKNYRIYVTCTTGYDRSPACVI 402

Query: 480 CYI 472
            Y+
Sbjct: 403 AYL 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,770,490
Number of Sequences: 37544
Number of extensions: 349582
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)