Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20641
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  43   3e-04
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/71 (38%), Positives = 46/71 (64%)
 Frame = +1

Query: 40  LNPQYDAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSL 219
           ++  ++ +AK FV+ YY++FD  + R NL  +Y    S +TFEG Q+QG   I+ KL S+
Sbjct: 113 MSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PGSMLTFEGAQIQGTEAIVAKLVSM 169

Query: 220 TFQKITRIVTA 252
            FQ++  ++T+
Sbjct: 170 PFQQVLHVITS 180


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 198 YGKIK*FDFSKNH*NSNCCDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-- 371
           Y KIK  +F          DS      GV++ V G L  +  P   +MQTFVL P  D  
Sbjct: 61  YEKIKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIR 120

Query: 372 SFYVQHDIFR 401
            +YV +DIFR
Sbjct: 121 KYYVHNDIFR 130


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 80  NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 193
           N + H +M+  +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 52  YDAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEG-VQLQGAVKIMEKLNSLTFQ 228
           Y  I + F+Q  Y +   P +     N  N  TSF   +G  Q      ++  +++ TF 
Sbjct: 171 YGVIIRSFLQLVYLVLRVPCRSLQFTNASNKYTSFGQIQGDAQPSERQSLLRSISNQTFY 230

Query: 229 KITRIVT 249
             T+ V+
Sbjct: 231 SSTQCVS 237


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 68
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,758,628
Number of Sequences: 59808
Number of extensions: 438305
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)