Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20641
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    72   3e-13
Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    31   1.0  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    31   1.0  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    31   1.0  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +1

Query: 34  MALNPQYDAIAKGFVQQYYTLFD--DPAQRAN-LVNMYNVETSFMTFEGVQLQGAVKIME 204
           M+ NP Y+++AK F+Q YY+ FD  D   RA  L ++Y+ E S+MTFEG Q +G   I++
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60

Query: 205 KLNSLTFQKITRIVTAVIPSQCLME 279
           K  +L F KI R +T VI SQ L +
Sbjct: 61  KFTTLGFTKIQRAIT-VIDSQPLYD 84



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 25/55 (45%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIHD 416
           DSQP++DG + + VLG+LK DEDP + + Q F+L+P    S+++ ++IFRL +H+
Sbjct: 78  DSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLHN 132


>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 43  NPQYDAIAKGFVQQYYTLFDDP---AQRANLVNMYNVETSFMTFEGVQLQGA 189
           NPQ   + + FV  Y+  +D P     R NL N Y+ + S  +     L+G+
Sbjct: 359 NPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRGS 410


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 276 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 276 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 87  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 276 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +1

Query: 88  YTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKI-MEKLNSLTFQKITRIVTAVIPS 264
           Y LF DPA R    N+Y    S    E    +G+        ++L  Q+I +I   + PS
Sbjct: 549 YELFIDPANRIVTENVYAAAKSRDLHEIDIFKGSEGFGFTIADNLNGQRIKKI---LFPS 605

Query: 265 QC--LMEAF*LMSLED*SVTKILHT 333
           QC  LME   ++ L+  +V  I HT
Sbjct: 606 QCPNLMEGDTIVELDGRNVRPIPHT 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,460,581
Number of Sequences: 27780
Number of extensions: 348942
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)