Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20641
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta...    60   1e-09
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta...    56   2e-08
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta...    48   5e-06
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    38   0.005
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    36   0.020
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    36   0.020
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil...    35   0.045
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil...    33   0.14 
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil...    32   0.42 
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil...    32   0.42 
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    31   0.73 
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    27   9.0  
At1g10980.1 68414.m01260 expressed protein  ; expression support...    27   9.0  

>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/67 (46%), Positives = 43/67 (64%)
 Frame = +1

Query: 55  DAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 234
           DA+AK FV+ YY+ FD  A R  LV++Y  E S +TFEG ++QG+  I+ KL  L FQ+ 
Sbjct: 4   DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 235 TRIVTAV 255
              +T V
Sbjct: 61  KHNITTV 67



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 240 NSNCCDSQPMFD-GGVLINVLGRLKCDEDPPHL-YMQTFVLKPLGDSFYVQHDIFRL 404
           N    D QP    GG+L+ V G L+   +   L + Q F L     ++YV +DIFRL
Sbjct: 63  NITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIFRL 119


>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 126

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/67 (41%), Positives = 40/67 (59%)
 Frame = +1

Query: 55  DAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 234
           DA++K FV+ YY+ FD    R  L  +Y  E S +TFEG ++QG   I+ KL SL FQ+ 
Sbjct: 7   DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 235 TRIVTAV 255
              ++ V
Sbjct: 64  KHHISTV 70



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +3

Query: 216 FDFSKNH*NS-NCCDSQPMFDGGVLINVLGRLK-CDEDPPHLYMQTFVLKPLGD-SFYVQ 386
           F   K+H ++ +C  S P    G+L+ V G L+   E+    + Q F L P    SFYV 
Sbjct: 60  FQQCKHHISTVDCQPSGPA--SGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVF 117

Query: 387 HDIFRL 404
           +DIFRL
Sbjct: 118 NDIFRL 123


>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
           putative similar to Swiss-Prot:P33331 nuclear transport
           factor 2 (NTF-2) (Nuclear transport factor P10)
           [Saccharomyces cerevisiae]
          Length = 127

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +1

Query: 55  DAIAKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 234
           + +A  FV  YY LFD+   R++L ++YN  TS +TFEG  + G   I  KL  L F + 
Sbjct: 10  EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLKQLPFDQC 66

Query: 235 TRIVTAV 255
             +++ V
Sbjct: 67  HHLISTV 73


>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +3

Query: 216 FDFSKNH*NSNCCDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDI 395
           FD+  +       DSQ  +  GV+  V G L   E     + Q+F L PL  S++V +D+
Sbjct: 69  FDYEISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDV 128

Query: 396 FR 401
           FR
Sbjct: 129 FR 130


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           D+Q   + GV++ V GRL  +++    + Q+F L P    ++V +D+FR
Sbjct: 82  DAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 130


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           D+Q   + GV++ V GRL  +++    + Q+F L P    ++V +D+FR
Sbjct: 82  DAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 130


>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           
          Length = 458

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           D+Q   +GG L+ V G    +E     + QTF L P    F+V +DI R
Sbjct: 84  DTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFFVLNDILR 132


>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profile: PF00076 RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain); similar to
           ras-GTPase-activating protein (GAP<120>)
           SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
          Length = 488

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           D+Q    GG ++ V G L   +     + QTF L P    ++V +D+FR
Sbjct: 86  DTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFR 134


>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 391

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQHDIF 398
           +S   ++GGVL+ V G +K  E      ++QTF L P    ++V  D+F
Sbjct: 16  NSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVF 64


>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 450

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 DSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQHDIF 398
           +S   ++GGVL+ V G +K  E      ++QTF L P    ++V  D+F
Sbjct: 75  NSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVF 123


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
           transport factor 2 (NTF2) domain
          Length = 1294

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 258 SQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 401
           SQ     G+L+ V G L  +E P   + Q F L P    + V  D+FR
Sbjct: 346 SQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 80  NNITHCSMIRLNGQILLICTMLKLHS*PLRE 172
           N++TH  +I L  QI+ + + + LHS P  E
Sbjct: 26  NSVTHSEIISLIAQIISLVSSMDLHSQPKPE 56


>At1g10980.1 68414.m01260 expressed protein  ; expression supported
           by MPSS
          Length = 516

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 35  WRSIRSTMQSLKVLCNNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLLKLWK 205
           +RS+  T++ LK+   NIT   + ++   +L+I  +L      +  Y    L + WK
Sbjct: 374 FRSLSKTLKKLKLNKRNITKLQLYKMFATVLVIMVVLSFAWIYVEVYLYSSLSQFWK 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,986
Number of Sequences: 28952
Number of extensions: 304505
Number of successful extensions: 573
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)