Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20640
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 121 3e-28
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 118 2e-27
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 113 9e-26
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 109 1e-24
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 63 1e-10
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 30 1.1
05_03_0459 - 14284513-14286336 30 1.5
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 30 1.5
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 4.5
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.5
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 5.9
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 28 5.9
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 27 7.8
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 121 bits (292), Expect = 3e-28
Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +1
Query: 256 ALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 435
A+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETPY IMFGPD
Sbjct: 93 AISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPD 152
Query: 436 ICGPGTKKVHVIFSYKGKNHLIKK-VSAAKMMSTHICTL 549
ICG TKKVH I + GKNHLIKK V TH+ TL
Sbjct: 153 ICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTL 191
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 12/67 (17%)
Frame = +2
Query: 89 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 232
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 233 TSEDARF 253
TSED RF
Sbjct: 85 TSEDYRF 91
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 501 QKSIRCKDDVYTHLYTLIVKP 563
+K + CK D TH+YTLI++P
Sbjct: 175 KKDVPCKTDQLTHVYTLIIRP 195
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 118 bits (285), Expect = 2e-27
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +1
Query: 256 ALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 435
A+S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPD
Sbjct: 86 AISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPD 145
Query: 436 ICGPGTKKVHVIFSYKGKNHLIKK-VSAAKMMSTHICTL 549
ICG TKKVH IF+ KNHLIKK V +H+ TL
Sbjct: 146 ICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTL 184
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 253
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RF
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRF 84
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 501 QKSIRCKDDVYTHLYTLIVKP 563
+K + C+ D +H+YTLI+ P
Sbjct: 168 KKDVPCETDQLSHVYTLIIHP 188
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 113 bits (272), Expect = 9e-26
Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +1
Query: 256 ALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 435
A+S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPD
Sbjct: 84 AISAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPD 143
Query: 436 ICGPGTKKVHVIFSYKGKNHLIKK-VSAAKMMSTHICT 546
ICG TKK+H+I SY+G+N+ IKK + TH+ T
Sbjct: 144 ICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYT 181
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +2
Query: 89 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDAR 250
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDAR 81
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 471 LQLQG*EPSHQKSIRCKDDVYTHLYTLIVKP 563
L QG +K ++C+ D TH+YT I++P
Sbjct: 156 LSYQGQNYPIKKDLQCETDKLTHVYTFILRP 186
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 109 bits (263), Expect = 1e-24
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +1
Query: 256 ALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 435
A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGPD
Sbjct: 84 AISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPD 143
Query: 436 ICGPGTKKVHVIFSYKGKNHLIKK 507
ICG TKK+H+I SY+G+N+ IKK
Sbjct: 144 ICGDQTKKLHLILSYQGQNYPIKK 167
Score = 53.2 bits (122), Expect = 1e-07
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +2
Query: 80 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDAR- 250
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 251 FLLS---PVSSNRS 283
F +S P SN++
Sbjct: 83 FAISAKFPEFSNKN 96
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 471 LQLQG*EPSHQKSIRCKDDVYTHLYTLIVKP 563
L QG +K ++C+ D TH YT I++P
Sbjct: 156 LSYQGQNYPIKKDLKCETDKLTHFYTFILRP 186
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICG 444
+P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD CG
Sbjct: 81 EPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140
Query: 445 PGTKKVHVIFSYK 483
T KVH I +K
Sbjct: 141 -STNKVHFILKHK 152
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 501 QKSIRCKDDVYTHLYTLIVKP 563
+K + C+ D TH+YTLI++P
Sbjct: 521 KKDVPCETDQLTHVYTLIIRP 541
>05_03_0459 - 14284513-14286336
Length = 607
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 161 KEFGKFKLTAGKFFS--DPEDDKGLKTSEDARFLLSPVSSNRSVMR 292
++ + K TA F DP D K L S +A++++SPV S S+ R
Sbjct: 545 EQLQEMKRTAQPVFDIIDPRDMKQLGISGEAQYIVSPVKSRDSLRR 590
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = -2
Query: 456 LGSRTTNVRAEHNLIWSLSVHVL---LLQFAVKDLEV--SASTVNVLFMFDSEL-DY-QG 298
LGS T N+ A+H+ S H+ L +FAV E+ S N L +++++ D+ G
Sbjct: 701 LGSSTANLSADHDTSNLSSPHIAASSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNG 760
Query: 297 FTLITERFELTGESK 253
+I ++F +GE+K
Sbjct: 761 AQVIFDQFLSSGEAK 775
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 437 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 294
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 125 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 18
TNH E P+ H LSKI+ A S RP+ +S+ +H+
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 123 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 37
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 164 EFGKFKLTAGKFFSDPEDD-KGLKTSEDARFLLS 262
EF KFK G F SD +D KGL + A +LL+
Sbjct: 109 EFNKFKCEDGSFKSDINNDPKGLLSLYHAAYLLT 142
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -2
Query: 519 CSGYFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWSLSVHVLLLQFAVKDLEVSAS 346
CSG+ L L+ ++ V ++G +++ + + + + +HV LL FA D +SAS
Sbjct: 80 CSGFLGTIEALQLMEKNVVAVIGPQSSGIGHVISHVVN-ELHVPLLSFAATDPTLSAS 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,236
Number of Sequences: 37544
Number of extensions: 356621
Number of successful extensions: 1023
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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