Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20640
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   9e-14
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                46   3e-05
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.040
SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)               29   3.5  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   28   6.1  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               28   6.1  
SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)          28   6.1  
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 33/54 (61%), Positives = 38/54 (70%)
 Frame = +2

Query: 92  VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARF 253
           V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA+F
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKF 809



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/36 (75%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
 Frame = +1

Query: 259 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 363
           +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 812 ISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
 Frame = +3

Query: 498 HQKSIRC-----KDDVYTHLYTLIVKP 563
           H+++I C     KDD  THLYTLIV+P
Sbjct: 835 HEQNIDCGGGYAKDDEMTHLYTLIVRP 861


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 373 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKVSAAK 522
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++  A K
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEEKHAKK 77


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 350 PPQSMSCSCLTVNWTTKGLPSLLNG 276
           P +  SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453


>SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)
          Length = 502

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 288 ITERFELTGESKNLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGN 109
           +TE      +S + AS+     +SSSGS+ ++  V L  P       L T +     SGN
Sbjct: 104 VTESVSSIFKSSSAASASASASVSSSGSILSYGKV-LEIPGPAISGGLVTSMTGSSVSGN 162

Query: 108 FSSKN 94
               N
Sbjct: 163 LGKTN 167


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 154 VLTVHPIAFPRIIRKLLLKEYI 89
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 518 AADTFLMRWFLPL*LKITCTFLVPGPQMSGPNIISYGV 405
           AAD   +RW   L  +IT   +V G + SGP I+  GV
Sbjct: 567 AADFSFVRWVQSLAERITSRVVVEGQKRSGP-IVDLGV 603


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 218  DKGLKTSEDARFLLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADT 358
            DK +  S D R L+SP   + S  + NP+  SS +N ++++    D+
Sbjct: 1837 DKIVNPSADQRLLISPDRFSPSQEKTNPFLFSSSTNAHRSVLNSIDS 1883


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 218 DKGLKTSEDARFLLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADT 358
           DK +  S D R L+SP   + S  + NP+  SS +N ++++    D+
Sbjct: 491 DKIVNPSADQRLLISPDRFSPSQEKTNPFLFSSSTNAHRSVLNSIDS 537


>SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)
          Length = 812

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 276 FELTGESKNLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSL 145
           F + G    +   ++F+P+  +     +  V+ N  NS P CSL
Sbjct: 748 FAVDGYKPGVVKFQIFRPICKAADEVEYCYVDGNCTNSVPSCSL 791


>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 318 SELDYQGFTLITERFELTGESKNLASSEVFKPLSSSGSLKNFPAV 184
           SEL  +GFT I      TG+SK  +  E+ + L+  G L+  PA+
Sbjct: 23  SELSLRGFTTIP-----TGDSKRASVGEISQLLAEPGILQVQPAI 62


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 233 TSEDARFLLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 361
           T+ DAR +  P +S     R++P  SSS S+ + + + + DT+
Sbjct: 191 TAADAREMADPATSTPWTFRMSPASSSSSSSSSSSSSSQEDTT 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,859
Number of Sequences: 59808
Number of extensions: 422988
Number of successful extensions: 1066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)