Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20640
(565 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.53
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.53
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 6.5
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 21 8.6
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 21 8.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 3 RPVANESEPLEVKFGITLQQIID 25
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 71 RPVANESEPLEVKFGITLQQIID 93
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.53
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 KPFSNEGKPLVVQFTVKHEQDID 342
+P +NE +PL V+F + +Q ID
Sbjct: 71 RPVANESEPLEVKFGITLQQIID 93
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 6.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 386 CSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPS 288
C+S + T R P C T N++T P+
Sbjct: 751 CASTTTITARSPQGSQGLLQCATSNYSTTRWPA 783
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 126 HESSGNFSSKNTSQFIEDNASKLTTTSTTA 37
HE N+ SKN +Q + + + S TA
Sbjct: 184 HEKLRNWFSKNVNQTVAETVRIIYGGSVTA 213
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 21.0 bits (42), Expect = 8.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 123 ESSGNFSSKNTSQFIE 76
+ +GNF+ KNT ++
Sbjct: 74 DENGNFNEKNTRDIVQ 89
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,128
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -