Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20639
(683 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 141 1e-32
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 139 7e-32
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 126 7e-28
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 118 3e-27
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 115 1e-24
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 114 2e-24
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 110 4e-23
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 109 5e-23
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 103 3e-21
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 100 4e-20
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 94 2e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 76 9e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 7e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 62 9e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 54 2e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 2e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 52 1e-05
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 50 7e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 47 4e-04
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 46 7e-04
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 43 0.008
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 42 0.011
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 42 0.019
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 42 0.019
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.032
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.043
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 40 0.056
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 40 0.056
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 39 0.13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 37 0.40
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 36 0.92
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 35 1.6
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 35 1.6
UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;... 35 2.1
UniRef50_A1B0H5 Cluster: Twin-arginine translocation protein, Ta... 33 4.9
UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter ... 33 6.5
UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein, exp... 33 8.6
UniRef50_A2E241 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 141 bits (342), Expect = 1e-32
Identities = 62/92 (67%), Positives = 74/92 (80%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RT
Sbjct: 87 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
IRYPDPLIKVND+IQ+D+ T KI D G
Sbjct: 147 IRYPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 118 bits (284), Expect = 1e-25
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 *KL 189
K+
Sbjct: 62 KKI 64
Score = 102 bits (245), Expect = 7e-21
Identities = 40/57 (70%), Positives = 53/57 (92%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 173 IKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG 229
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +3
Query: 177 ILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ KI QR IK+DGKVRTD TYPAGF
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGF 86
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 139 bits (336), Expect = 7e-32
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRT
Sbjct: 87 MDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMD 508
IRYPDPLI NDS+Q+DIA+ KI D
Sbjct: 147 IRYPDPLIHANDSVQVDIASGKITD 171
Score = 117 bits (281), Expect = 3e-25
Identities = 54/63 (85%), Positives = 57/63 (90%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
ARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 2 ARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEV 61
Query: 181 *KL 189
K+
Sbjct: 62 TKI 64
Score = 114 bits (275), Expect = 2e-24
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIG
Sbjct: 173 IKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIG 229
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +3
Query: 177 ILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ KIV QRL+KVDGKVRTDPTYPAG+
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGY 86
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 126 bits (303), Expect = 7e-28
Identities = 57/95 (60%), Positives = 71/95 (74%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 538
IRYPDPLIK ND+I+LD+ KI++ +G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 107 bits (256), Expect = 3e-22
Identities = 47/59 (79%), Positives = 52/59 (88%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 89.0 bits (211), Expect = 9e-17
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ ++ I+ QR I+VDGKVRTD TYPAGF
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGF 86
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 118 bits (284), Expect = 1e-25
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 *KL 189
K+
Sbjct: 62 KKI 64
Score = 102 bits (245), Expect = 7e-21
Identities = 40/57 (70%), Positives = 53/57 (92%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IG
Sbjct: 205 IKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIG 261
Score = 83.4 bits (197), Expect(2) = 3e-27
Identities = 34/52 (65%), Positives = 44/52 (84%)
Frame = +2
Query: 353 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 508
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI D
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITD 203
Score = 61.7 bits (143), Expect(2) = 3e-27
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 355
+DV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 87 MDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 42.3 bits (95), Expect = 0.011
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3
Query: 177 ILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ KI QR IK+DGKVRTD TYP GF
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPTGF 86
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 115 bits (276), Expect = 1e-24
Identities = 52/97 (53%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGT-CV 538
TIR+P+ LIK NDSI LD+ K++D S+G+ CV
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 87.4 bits (207), Expect = 3e-16
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ ES
Sbjct: 2 SRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Score = 56.0 bits (129), Expect = 8e-07
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IG
Sbjct: 173 IKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIG 229
Score = 32.7 bits (71), Expect = 8.6
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 165 DRKRILKIVKQRLIKVDGKVRTDPTYPAG 251
+++ L I+K+ I VDGKVR D +PAG
Sbjct: 57 NQRESLNILKKNEIYVDGKVRADKNFPAG 85
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 114 bits (275), Expect = 2e-24
Identities = 50/88 (56%), Positives = 66/88 (75%)
Frame = +2
Query: 239 LSCWILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 418
L WI+DV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 419 HDGRTIRYPDPLIKVNDSIQLDIATTKI 502
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 96.3 bits (229), Expect = 6e-19
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 13 AFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEV 71
Query: 181 *KL 189
K+
Sbjct: 72 KKI 74
Score = 69.7 bits (163), Expect = 6e-11
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 651
+KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFS 228
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 110 bits (264), Expect = 4e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +2
Query: 305 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 484
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 485 IATTKIMDSSSLSLG 529
+ T KI D G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 108 bits (260), Expect = 1e-22
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
A P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 AHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 *KL 189
K+
Sbjct: 62 KKI 64
Score = 99.1 bits (236), Expect = 9e-20
Identities = 38/56 (67%), Positives = 51/56 (91%)
Frame = +1
Query: 514 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 146 KFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIG 201
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 109 bits (263), Expect = 5e-23
Identities = 47/93 (50%), Positives = 67/93 (72%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
TIR+P+P IK+ D+++ D+ KI + + L G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 77.0 bits (181), Expect = 4e-13
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +1
Query: 520 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G
Sbjct: 288 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLG 341
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 102
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 103 ---HKLRECLPLVIFLRNRLKYALTGNE 177
HKLRE LPL + L+ RL YAL G +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 103 bits (248), Expect = 3e-21
Identities = 45/92 (48%), Positives = 67/92 (72%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRT
Sbjct: 87 MDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
IRYP P ++ ND+I+L++ T KI+D +G
Sbjct: 147 IRYPHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 99.1 bits (236), Expect = 9e-20
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
ARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 2 ARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Score = 89.4 bits (212), Expect = 7e-17
Identities = 41/80 (51%), Positives = 52/80 (65%)
Frame = +1
Query: 442 PRPTYQSQRFHPVRHRNYEDYGLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 621
P P Q+ + + +KF+ GN M+ GG +GRVG IV RE HPGSF+IVH
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVH 209
Query: 622 IKDSTGHTFATRLNNVFIIG 681
IKD+ G+TF TRLNNVF+IG
Sbjct: 210 IKDAKGNTFTTRLNNVFVIG 229
Score = 41.5 bits (93), Expect = 0.019
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGFWMLSQLRRLMNCF 293
+ + IVK R IK+DGK+RTD YP GF + + R F
Sbjct: 59 REVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 100 bits (239), Expect = 4e-20
Identities = 41/93 (44%), Positives = 65/93 (69%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
TI Y DP ++V+D+++ +I T ++ +G
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEVESVIKFKVG 192
Score = 83.4 bits (197), Expect = 5e-15
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEA 75
Score = 75.4 bits (177), Expect = 1e-12
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +1
Query: 508 LIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG
Sbjct: 186 VIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIG 243
Score = 39.9 bits (89), Expect = 0.056
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGFWMLSQLRRLMNCF 293
K + IVK+RL+KVDGKVRT+ YP G + +L + F
Sbjct: 73 KEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 94.3 bits (224), Expect = 2e-18
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
Score = 85.0 bits (201), Expect = 2e-15
Identities = 40/85 (47%), Positives = 53/85 (62%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 84 MDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHR 143
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMD 508
IRYPDP + D+I ++ K +D
Sbjct: 144 IRYPDPHTSIGDTIVYNVKEKKCVD 168
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +1
Query: 433 HPLPRPTYQSQRFHPVRHRNYEDYGLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFD 612
+P P + + V+ + D LIK G ++TGG N GR+G IV E HPG+F+
Sbjct: 146 YPDPHTSIGDTIVYNVKEKKCVD--LIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFN 203
Query: 613 IVHIKDSTGHTFATRLNNVFIIG 681
I H+KD++G FATR N+F+IG
Sbjct: 204 IAHLKDASGAEFATRAANIFVIG 226
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 75.8 bits (178), Expect = 9e-13
Identities = 36/86 (41%), Positives = 59/86 (68%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
+ DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMD 508
+IR+ DP I + +I++ T+K+++
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIE 170
Score = 66.9 bits (156), Expect = 4e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 162
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 62.9 bits (146), Expect = 7e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 183
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 184 KL 189
K+
Sbjct: 64 KI 65
Score = 41.1 bits (92), Expect = 0.024
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +1
Query: 505 GLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G + F G L ITGG+++G IV E DIV +++ G F T VFI+G
Sbjct: 178 GHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVG 236
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 62.5 bits (145), Expect = 9e-09
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 183
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 184 KL 189
K+
Sbjct: 67 KI 68
Score = 40.7 bits (91), Expect = 0.032
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +2
Query: 233 PYLSCWILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 412
P I+DVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 413 VTHDGRT--IRYPDP------LIKVNDSIQLDI 487
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+D++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+
Sbjct: 88 MDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKN 145
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 538
+ + V D I L + +I + L G CV
Sbjct: 146 VIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 186
G +KHLK APK W + + +PS G H + L L + +R+ LK A E+ +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 187 L*NNAS 204
+ N+ +
Sbjct: 65 IINSGN 70
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 19 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
Score = 39.5 bits (88), Expect = 0.075
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+ I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 431 ---TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
T IK DS+ D+ I L LG
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLG 177
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 505 GLIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 681
G IKF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
Score = 49.2 bits (112), Expect = 9e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 186
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E+ K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 187 L 189
L
Sbjct: 65 L 65
Score = 38.3 bits (85), Expect = 0.17
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
+DV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 431 TI--RYPDPLIKVND 469
I R DP V D
Sbjct: 147 NILVRVKDPRNPVED 161
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 49.6 bits (113), Expect = 7e-05
Identities = 29/87 (33%), Positives = 41/87 (47%)
Frame = +2
Query: 269 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 448
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 449 PLIKVNDSIQLDIATTKIMDSSSLSLG 529
KV D + + KI + + G
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++D +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGT-CV*SR 547
++ IKV DS+ + +I+ + +G+ C+ +R
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 39.9 bits (89), Expect = 0.056
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+KFE G+LC+IT G++LG + I + ++H++ G + +++ +IG
Sbjct: 173 LKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIG 229
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+ + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 431 TI 436
I
Sbjct: 141 NI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E+
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEA 64
Score = 39.5 bits (88), Expect = 0.075
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 431 TI 436
+
Sbjct: 149 NV 150
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 42.7 bits (96), Expect = 0.008
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 162
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
Score = 37.9 bits (84), Expect = 0.23
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 431 TIRYPD-PLIKVNDSIQLDIATTKIMDSSSLSLG 529
I D L D++ + + + S G
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 42.3 bits (95), Expect = 0.011
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 189
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 41.5 bits (93), Expect = 0.019
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
+ D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 431 TIRYPDPLIKVNDSIQLDIAT 493
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
Score = 38.3 bits (85), Expect = 0.17
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 517 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIG 681
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVG 230
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 189
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 41.5 bits (93), Expect = 0.019
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 189
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 190 *NN 198
NN
Sbjct: 66 LNN 68
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 40.7 bits (91), Expect = 0.032
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 189
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
Score = 33.1 bits (72), Expect = 6.5
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 388
+ D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 80 VFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.3 bits (90), Expect = 0.043
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = -3
Query: 678 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLD 511
D EHV + R + ++ GVL VHN EG + LA D V + DH Q ++LD
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELD 108
Score = 37.5 bits (83), Expect = 0.30
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = -2
Query: 487 DV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 308
DV +G+ D + V +GAA+++ R+ L QLVL D V ES+L
Sbjct: 117 DVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLG 176
Query: 307 IID*TKQFISLLN*DNI 257
++D + FI+L + D++
Sbjct: 177 VVDEPEVFIALFDGDDV 193
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 39.9 bits (89), Expect = 0.056
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 153
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
Score = 33.1 bits (72), Expect = 6.5
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTI 579
IK+E GNL MI GG + G VG+I
Sbjct: 167 IKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.9 bits (89), Expect = 0.056
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 156
H KRL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
Score = 36.7 bits (81), Expect = 0.53
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
+ DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 81 LFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGT 139
Query: 431 TI 436
I
Sbjct: 140 NI 141
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+KFE GNL M+ GG++ G G I+ RE + V I T F T + V +IG
Sbjct: 166 LKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIG 221
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 38.7 bits (86), Expect = 0.13
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGR 430
+DV+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+
Sbjct: 84 MDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGK 142
Query: 431 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
TI I +D + + I +I + ++ G
Sbjct: 143 TIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.1 bits (82), Expect = 0.40
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 162
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -3
Query: 681 ADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDE 508
A+ EH+ Q + + G+L+V ++G + L D ++T V ++ H +P +K DE
Sbjct: 118 ANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDE 175
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
H+ R AP + K + R GPHK++E +PL I L+ LK T E+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56
Score = 34.3 bits (75), Expect = 2.8
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 251 ILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 430
++DVV I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 431 TI 436
I
Sbjct: 141 NI 142
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 508 LIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
++KF GN ITGG ++G + TI S E + ++VH+ + F+T + VF++G
Sbjct: 166 VLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220
>UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;
n=1; Neurospora crassa|Rep: Related to merozoite surface
antigen 2 - Neurospora crassa
Length = 388
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 506 DSSSLSLGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 652
+S+S + T VT G+ P A P+P+T T+ P DTP P
Sbjct: 275 NSTSAAAATAAAPTNEVTDGLRKPDASAEQQPSPTTATTTTPPTDTPKP 323
>UniRef50_A1B0H5 Cluster: Twin-arginine translocation protein, TatB
subunit; n=1; Paracoccus denitrificans PD1222|Rep:
Twin-arginine translocation protein, TatB subunit -
Paracoccus denitrificans (strain Pd 1222)
Length = 167
Score = 33.5 bits (73), Expect = 4.9
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Frame = +2
Query: 371 VKRVATGPKNVPYLVTHDGR-TIR-------YPDPLIKVNDSIQLDIATTKIMDSSSL-- 520
V + GPK++P+L GR T R + + S LD A + D SL
Sbjct: 15 VALIVIGPKDLPHLFHSLGRITARARSMAREFSSAMEDAAKSAGLDEAGNALRDVKSLTS 74
Query: 521 --SLGTCV*SREAVTWGVWAPSCPARDIPA-PSTLCTSRTPRDTPSPRG 658
+LG R A + W P P+R A P T P D P+P G
Sbjct: 75 KKALGLDALERAADRFEKWEPKAPSRSTQAVPDPGATGPEPGDGPNPAG 123
>UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter
uraniumreducens Rf4|Rep: Beta-ketoacyl synthase -
Geobacter uraniumreducens Rf4
Length = 7157
Score = 33.1 bits (72), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 445 RPTYQSQRFHPVRHRNYEDYGLIKFES 525
+P YQ QR HP+ H+N D+ +F S
Sbjct: 1477 KPEYQEQRIHPLLHQNASDFSEQRFSS 1503
>UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein,
expressed; n=3; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 390 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 503
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>UniRef50_A2E241 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 227
Score = 32.7 bits (71), Expect = 8.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 413 VTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
V+HDGRT YPD + ++ L ++T + ++ S +LG
Sbjct: 120 VSHDGRTSPYPD---DITSTVDLPVSTDSVSNADSTALG 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,287,132
Number of Sequences: 1657284
Number of extensions: 16930424
Number of successful extensions: 53137
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 50220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53096
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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