Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20639
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 143 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 143 2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 142 4e-35
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 30 0.27
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 29 0.63
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.83
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.4
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKI 502
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 105 bits (251), Expect = 8e-24
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 83.8 bits (198), Expect = 2e-17
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ + I+ QRLIKVDGKVRTD T+P GF
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGF 86
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKI 502
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 105 bits (251), Expect = 8e-24
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 83.8 bits (198), Expect = 2e-17
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ + I+ QRLI+VDGKVRTD T+P GF
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFPTGF 86
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 142 bits (344), Expect = 4e-35
Identities = 62/83 (74%), Positives = 74/83 (89%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 434 IRYPDPLIKVNDSIQLDIATTKI 502
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 105 bits (251), Expect = 8e-24
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 83.8 bits (198), Expect = 2e-17
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
IKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
+ + I+ QRLIKVDGKVRTD T+P GF
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGF 86
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 30.3 bits (65), Expect = 0.27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 457 QSQRFHPVRHRNYEDYGLIKFES 525
++++ HPVRH YED + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 484 HRNYEDYGLIKFESGN-LCMITGGRNLGRV 570
HR Y GLI+ E N LC+I+G + RV
Sbjct: 57 HRIYGTLGLIELEGSNFLCVISGASEVARV 86
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 675 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 577
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 514 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 618
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 257 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 433
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 434 IR 439
++
Sbjct: 1778 LK 1779
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 424 WPHHPLPRPTYQSQR 468
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 261 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 371
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 427 PHHPLPRPTYQSQRFHPVRHRNYEDY 504
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 352 SLLRGDTVDCESALNIID*TKQ 287
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,622
Number of Sequences: 5004
Number of extensions: 66345
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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