Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20639
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   8e-31
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   6.1  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  130 bits (315), Expect = 8e-31
 Identities = 59/92 (64%), Positives = 72/92 (78%)
 Frame = +2

Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
           +DVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570

Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
           IRYPDP IKVND++ +DI T K++D      G
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score =  120 bits (289), Expect = 1e-27
 Identities = 53/63 (84%), Positives = 57/63 (90%)
 Frame = +1

Query: 1   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 180
           ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E 
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485

Query: 181 *KL 189
            K+
Sbjct: 486 KKI 488



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 38/57 (66%), Positives = 49/57 (85%)
 Frame = +1

Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IG
Sbjct: 597 IKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIG 653



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +3

Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
           + + KIVKQRLIK+DGKVRTD TYPAGF
Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTYPAGF 510


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 239 LSCWILDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 418
           L  W+    S  K N ++  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 419 HDG 427
            +G
Sbjct: 318 SEG 320


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 140 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 3
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,426,898
Number of Sequences: 59808
Number of extensions: 546873
Number of successful extensions: 1652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)