Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20639
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 118 3e-27
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 0.44
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.1
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.1
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 28 5.4
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 28 5.4
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 28 5.4
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.4
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 28 7.1
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 9.4
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 118 bits (285), Expect = 3e-27
Identities = 55/92 (59%), Positives = 67/92 (72%)
Frame = +2
Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
+DVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRT
Sbjct: 86 MDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRT 145
Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 529
IRYPDP +KVND+I +I+T KI DS G
Sbjct: 146 IRYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177
Score = 100 bits (239), Expect = 1e-21
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 183
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E+
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 184 KL 189
K+
Sbjct: 62 KI 63
Score = 91.1 bits (216), Expect = 7e-19
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +1
Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+KFE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IG
Sbjct: 172 VKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIG 228
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 183 KIVKQRLIKVDGKVRTDPTYPAGFWMLSQLRRLMNCF 293
KI+ QR+++VDGKVRT +P GF + + R F
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect(2) = 0.44
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 543 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 644
HG G+ G H T L H H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
Score = 23.0 bits (47), Expect(2) = 0.44
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +3
Query: 618 AHQGLHGTHLRHEVEQRVHN 677
AH G HG H H H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 314 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 445
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 531 LVYDHGRP*LGACGHHRVPRETSRLLRH 614
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 531 LVYDHGRP*LGACGHHRVPRETSRLLRH 614
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = -1
Query: 665 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 504
L N P + ++ P + P+ PK PP + K P+ LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 430 HHPLPRPTYQSQRFHPVRHRNYEDYGL 510
HH PTY F+P H++Y+ + L
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHL 58
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = -1
Query: 665 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 504
L N P + ++ P + P+ PK PP + K P+ LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = -1
Query: 665 LFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLMSP 504
L N P + ++ P + P+ PK PP + K P+ LM P
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 471 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 307
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 380 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSL 526
++TG N+P +HD + + D L K + + +++ + MD + L
Sbjct: 20 LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMDIGGVPL 68
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 87 TVNRSPQVARVLAPGDFPEESSEVCFDRKRILKIVKQRLIKVDGKVRTDPTYPAGFWMLS 266
T + SP + +AP P E+ + R+ +K L + +R DP + F +
Sbjct: 331 TQHMSPNLTATIAPLIIPTENYDSPSYRQPAIKRKATDLTNEEHDLRRDPMFQPTFELAR 390
Query: 267 QLRRL 281
+LR+L
Sbjct: 391 KLRKL 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,230
Number of Sequences: 27780
Number of extensions: 393739
Number of successful extensions: 1196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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