Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20639
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   126   1e-29
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             126   2e-29
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   126   2e-29
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.71 
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ...    31   0.94 
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara...    29   3.8  
At2g16570.1 68415.m01900 amidophosphoribosyltransferase / glutam...    29   3.8  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  126 bits (304), Expect = 1e-29
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +2

Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
           +DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 538
           IRYPDPLIK ND+I+LD+   KI++     +G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181



 Score =  107 bits (256), Expect = 9e-24
 Identities = 47/59 (79%), Positives = 52/59 (88%)
 Frame = +1

Query: 1   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +1

Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +3

Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
           + ++ I+ QR I+VDGKVRTD TYPAGF
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGF 86


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +2

Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
           +DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 538
           IRYPDPLIK ND+I+LD+   KI++     +G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score =  107 bits (256), Expect = 9e-24
 Identities = 47/59 (79%), Positives = 52/59 (88%)
 Frame = +1

Query: 1   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +1

Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +3

Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
           + ++ I+ QR I+VDGKVRTD TYPAGF
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGF 86


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +2

Query: 254 LDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 433
           +DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 434 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 538
           IRYPDPLIK ND+I+LD+   KI++     +G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score =  107 bits (256), Expect = 9e-24
 Identities = 47/59 (79%), Positives = 52/59 (88%)
 Frame = +1

Query: 1   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 177
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +1

Query: 511 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +3

Query: 171 KRILKIVKQRLIKVDGKVRTDPTYPAGF 254
           + ++ I+ QR I+VDGKVRTD TYPAGF
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGF 86


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 122 KHSRNLWGPVDGLGAYTPPSLSNIHAL 42
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
           glutamine phosphoribosylpyrophosphate amidotransferase,
           putative / phosphoribosyldiphosphate 5-amidotransferase,
           putative similar to amidophosphoribosyltransferase
           [Arabidopsis thaliana] GI:469195; contains Pfam profiles
           PF00156: Phosphoribosyl transferase domain, PF00310:
           Glutamine amidotransferases class-II
          Length = 532

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 472 HPVRHRNYEDYGLIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 651
           H ++HR  E  G++      L  ITG   +  V T       PG   I H++ ST  + A
Sbjct: 97  HALQHRGQEGAGIVAANQNGLESITGVGLVSDVFTESKLNNLPGDIAIGHVRYST--SGA 154

Query: 652 TRLNNV 669
           + L NV
Sbjct: 155 SMLKNV 160


>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
           [Arabidopsis thaliana] GI:4894914; contains Pfam profile
           PF02416: mttA/Hcf106 family
          Length = 260

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +2

Query: 389 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV*SREAVTWGV 568
           GPK +  +  + G+T+R   P I+    +  D  +T   +     + T     +  T  V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165

Query: 569 W-APSCPARDIPAPSTLCTSRTPRDTPSPRG*TT 667
              P  P   +P+     T+  P D+ SP+  T+
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPKAYTS 199


>At2g16570.1 68415.m01900 amidophosphoribosyltransferase / glutamine
           phosphoribosylpyrophosphate amidotransferase /
           phosphoribosyldiphosphate 5-amidotransferase identical
           to amidophosphoribosyltransferase [Arabidopsis thaliana]
           GI:469193; identical to cDNA
           amidophosphoribosyltransferase GI:469192
          Length = 566

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 472 HPVRHRNYEDYGLIKFESGNLCM-ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 648
           H ++HR  E  G++      +   ITG   +  V      ++ PG F I H++ ST    
Sbjct: 111 HALQHRGQEGAGIVTVSPEKVLQTITGVGLVSEVFNESKLDQLPGEFAIGHVRYSTAG-- 168

Query: 649 ATRLNNV--FIIG 681
           A+ L NV  F+ G
Sbjct: 169 ASMLKNVQPFVAG 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,978
Number of Sequences: 28952
Number of extensions: 374226
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)