Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20638
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 3e-21
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 26 0.60
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 30 1.8
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 29 2.3
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 5.4
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 5.4
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 28 7.1
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 25 8.0
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 42 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 221
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +2
Query: 320 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 499
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 500 VK 505
VK
Sbjct: 703 VK 704
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 26.2 bits (55), Expect(2) = 0.60
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 106 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKV*RY 267
+PC ++ C + +S+ V ++K P P TL ++G + +K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451
Score = 23.8 bits (49), Expect(2) = 0.60
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 88 PGPQPPSPCNVRP 126
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 189
T+K HT +P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 7 HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 129
H L K KT + T+K +T +P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 43 QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 198
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 132 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNGKSMKISVPPH 281
+ G +M +G+PCKI + K G HG +H+ G D NG +S PH
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG---CVSAGPH 62
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 522 VESCVALTAMTHSS----PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIR 355
V C L A++ S P+ S V + +LP+ V C+P SPS I RS P
Sbjct: 235 VVECGGLRAISECSDPYPPRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISN 293
Query: 354 VR 349
VR
Sbjct: 294 VR 295
>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 299 GVRPCCVWRDRYLHTFTIEDINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 126
G+R C D L F + + + S A ++ +G GH N + L H + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 144 RNRFYAGPNIAW--GRWLRPRSLRSQSV 67
R F+ PN+A G+WL P+SLR+ V
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASRV 974
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 22 TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 126
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 287 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 454
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 455 LCTVLKSCGEEC 490
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 263 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 430
D+ S H +D+P+ E++ + +D ++ +D L E L+IPD T +
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648
Query: 431 DFDSGKELLCTVLKSCGEECVIAVKATQLSTNKP 532
SG E LC VLK C A + S P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 25.0 bits (52), Expect(2) = 8.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 61 KTHTLRPETPGPQPPSP 111
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 85 TPGPQPPSPCNVRPCVKT 138
T GP PP+ N +P T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +2
Query: 272 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 451
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 452 LLCTVLKSCGEECV 493
T KS GEE V
Sbjct: 344 SAATYGKSDGEENV 357
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 519 ESC--VALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 400
+SC + T+ S P + H+N+ P S NC P PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,933
Number of Sequences: 59808
Number of extensions: 482573
Number of successful extensions: 1447
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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