Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20637
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 461 LLSTLGEKLSDDEVEQSCR 517
           +L  L EKL +D +  +CR
Sbjct: 430 ILGELSEKLREDVINYNCR 448


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 461 LLSTLGEKLSDDEVEQSCR 517
           +L  L EKL +D +  +CR
Sbjct: 398 ILGELSEKLREDVINYNCR 416


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 177 QEAFQLFDS-RGDGKIHVAQIGDAL 248
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 177 QEAFQLFDS-RGDGKIHVAQIGDAL 248
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 499 GRAILQGQEDSQGNINYENF 558
           G   +QG+E +  ++N ENF
Sbjct: 33  GHQEMQGKEKNSASLNSENF 52


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 541 YFPESLLVPAGLLYLII 491
           Y P +L+VP  L Y++I
Sbjct: 27  YLPLTLIVPITLTYVVI 43


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 703 NV*VYFNKFLLTVSHYGSNWYGYRLG*FTDKS 608
           NV  Y +  ++ V H G NW    L    D S
Sbjct: 795 NVQAYIDGNVVFVCHNGMNWMPTHLNALLDMS 826


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 434 THCHLCQNGADPQ*SH*QCR 375
           T C  C+ G  P  +H  CR
Sbjct: 624 TQCISCRQGTVPDETHSACR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,737
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)