Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20635
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   133   3e-32
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   5.3  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   7.0  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   9.2  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   9.2  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  133 bits (321), Expect = 3e-32
 Identities = 58/94 (61%), Positives = 78/94 (82%)
 Frame = +1

Query: 253 NDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 432
           +DAILDA L  DP +KVACET +KTGMV++ GEIT+++ +DYQKV+R T+K IGYDDS K
Sbjct: 25  SDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEK 84

Query: 433 GFDYKTCSVMLALDQQSPNIAAGVHGTEMTRKLG 534
           GFDYKTC+V++A++QQSP+IA G+H  +   +LG
Sbjct: 85  GFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELG 118



 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +3

Query: 522 EEVGAGDQGLMFGYATDETEECMPLTVVLXHKLN 623
           EE+GAGDQG+MFGYATDET E +PLT++L HKLN
Sbjct: 115 EELGAGDQGIMFGYATDETPEKLPLTILLAHKLN 148



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +2

Query: 194 FLFTSESVGEGHPDKMCDQ 250
           FLFTSESVGEGHPDK+CDQ
Sbjct: 5   FLFTSESVGEGHPDKICDQ 23



 Score = 32.7 bits (71), Expect = 0.061
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 644 RRNGEFWWARPDSKTQVXCEY 706
           RR+G   W RPD+KTQV  EY
Sbjct: 155 RRDGSLPWLRPDTKTQVTIEY 175


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 361 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHGTEM 519
           + N DY K+  E VK  G D+       K C  ++ L Q+  +   G    +M
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQKLLHKDLGFQALDM 158


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 465 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 340
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 250 LVAHFVWMTLANRFRCEQKY*SIFHII 170
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 92  ITPNSPRAEFLQPGGSTSSRAGRPPRWR 9
           +TP   +   L  GGSTS +   PPR+R
Sbjct: 180 LTPLQRKLMGLPEGGSTSGKHLTPPRYR 207


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 496 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 377
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,872
Number of Sequences: 5004
Number of extensions: 76795
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)