Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20635
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 115 5e-26
01_02_0051 - 10655867-10657057 111 5e-25
01_03_0090 - 12347165-12348349 111 6e-25
08_02_1448 - 27168389-27172021 31 1.0
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.4
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 4.1
04_04_0531 - 26048558-26049082 29 5.5
03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468... 28 7.2
03_01_0030 + 290232-291020 28 7.2
>05_01_0264 + 2030080-2031270
Length = 396
Score = 115 bits (276), Expect = 5e-26
Identities = 51/86 (59%), Positives = 69/86 (80%)
Frame = +1
Query: 253 NDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 432
+DA+LDA L +DPD+KVACET TKT MV++ GEIT+KANVDY+K+VRET ++IG+ +
Sbjct: 27 SDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADV 86
Query: 433 GFDYKTCSVMLALDQQSPNIAAGVHG 510
G D C V++ ++QQSP+IA GVHG
Sbjct: 87 GLDADHCKVLVNIEQQSPDIAQGVHG 112
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +3
Query: 501 GAWNRNDEEVGAGDQGLMFGYATDETEECMPLTVVLXHKL 620
G + + EE+GAGDQG MFGYATDET E MPL+ VL KL
Sbjct: 112 GHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKL 151
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 194 FLFTSESVGEGHPDKMCDQ 250
FLFTSESV EGHPDK+CDQ
Sbjct: 7 FLFTSESVNEGHPDKLCDQ 25
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 629 KLQSFRRNGEFWWARPDSKTQVXCEY 706
+L R+NG W RPD KTQV EY
Sbjct: 154 RLTEVRKNGTCAWLRPDGKTQVTVEY 179
>01_02_0051 - 10655867-10657057
Length = 396
Score = 111 bits (268), Expect = 5e-25
Identities = 49/86 (56%), Positives = 69/86 (80%)
Frame = +1
Query: 253 NDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 432
+DA+LDA L +DP++KVACET TKT MV++ GEIT+KANVDY+K+VR+T + IG+ +
Sbjct: 27 SDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDV 86
Query: 433 GFDYKTCSVMLALDQQSPNIAAGVHG 510
G D + C V++ ++QQSP+IA GVHG
Sbjct: 87 GLDAEHCKVLVNIEQQSPDIAQGVHG 112
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +3
Query: 501 GAWNRNDEEVGAGDQGLMFGYATDETEECMPLTVVLXHKL 620
G + + EE+GAGDQG MFGYATDET E MPL+ VL KL
Sbjct: 112 GHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKL 151
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +2
Query: 176 MEDGSVFLFTSESVGEGHPDKMCDQ 250
M + FLFTSESV EGHPDK+CDQ
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQ 25
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 629 KLQSFRRNGEFWWARPDSKTQVXCEY 706
+L R+NG W RPD KTQV EY
Sbjct: 154 RLTEVRKNGACAWLRPDGKTQVTVEY 179
>01_03_0090 - 12347165-12348349
Length = 394
Score = 111 bits (267), Expect = 6e-25
Identities = 50/86 (58%), Positives = 66/86 (76%)
Frame = +1
Query: 253 NDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 432
+DA+LDA L QDPD+KVACET TKT MV++ GEIT+KA VDY+K+VR+T + IG+
Sbjct: 26 SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDV 85
Query: 433 GFDYKTCSVMLALDQQSPNIAAGVHG 510
G D C V++ ++QQSP+IA GVHG
Sbjct: 86 GLDADRCKVLVNIEQQSPDIAQGVHG 111
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +3
Query: 501 GAWNRNDEEVGAGDQGLMFGYATDETEECMPLTVVLXHKL 620
G + + EE+GAGDQG MFGYATDET E MPL+ VL KL
Sbjct: 111 GHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKL 150
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 194 FLFTSESVGEGHPDKMCDQ 250
FLFTSESV EGHPDK+CDQ
Sbjct: 6 FLFTSESVNEGHPDKLCDQ 24
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 629 KLQSFRRNGEFWWARPDSKTQVXCEYV 709
+L R+NG W RPD KTQV EY+
Sbjct: 153 RLTEVRKNGTCAWLRPDGKTQVTVEYL 179
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 522 EEVGAGDQGLMFGYATDETEECMPLTVVLXHKLNQXNCRASGEMENFGGQDQIPKHRXLA 701
E +G LM A D +EC+ VL H + N R FG Q+ + + +
Sbjct: 508 ESIGCKMHDLMHDLAKDVADECVTSEHVLQHDASVRNVRHMNISSTFGMQETMEMLQVTS 567
Query: 702 NMYCW 716
++ W
Sbjct: 568 SLRTW 572
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 301 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 462
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 301 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVMLALD 474
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM---- 159
Query: 475 QQSPNIAAGVHG 510
+ S N+ G HG
Sbjct: 160 KNSRNV--GYHG 169
>04_04_0531 - 26048558-26049082
Length = 174
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 9 SPPRWAARSRTSGSPGLQEFGTRTVWG 89
+P R AA +R GSPG EF VWG
Sbjct: 18 APSRGAA-ARCPGSPGADEFDESDVWG 43
>03_01_0639 -
4678993-4679034,4679880-4679945,4680040-4680150,
4680266-4680304,4680394-4680493,4680597-4680712,
4680897-4681035,4681151-4681222,4681331-4681434,
4681616-4681867
Length = 346
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -2
Query: 693 TCVLESGLAHQNSPFRLKLCNFXD*VCVXAL--RSTACILLSHLLHNRTSSPGLLP 532
TC + G +Q PFRL + +C A +T S+ N +S LLP
Sbjct: 179 TCAIICGYVYQCPPFRLSYRGLGEPLCFAAFGPLATTAFYFSNSSRNISSGTALLP 234
>03_01_0030 + 290232-291020
Length = 262
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 564 HNRTSSPGLLPQLPRHFCSMHPSS 493
H RTS+ + P P H MHPSS
Sbjct: 34 HRRTSAAAVTPLPPDHRTPMHPSS 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,406,818
Number of Sequences: 37544
Number of extensions: 540601
Number of successful extensions: 1369
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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