Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20635
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 194 ILIHLPYHNCVRWFSRIHSFLKSPAF 117
           I+ HL  H  V W+S+  +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 74  RAEFLQPGGSTSSR 33
           + EFL PGGS   R
Sbjct: 67  KCEFLNPGGSVKDR 80


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 74  EDCLGLY*WANSKFRM 121
           EDCL L  W   K+R+
Sbjct: 124 EDCLYLNIWVPQKYRL 139


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 184 WISIFVHIGICWRGSSRQNVRPNNDAILDAHLN 282
           W+ + V +GI  +G +   VR N+   L   +N
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPRKLANSMN 36


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 667 GKTRFQNTGXLRICIA 714
           GKTR QNTG    CIA
Sbjct: 820 GKTRHQNTG---CCIA 832


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 74  EDCLGLY*WANSKFRM 121
           EDCL L  W   K+R+
Sbjct: 124 EDCLYLNIWVPQKYRL 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,270
Number of Sequences: 438
Number of extensions: 5459
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)