Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20634
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.2  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 156 SFSLVVLGTFPLIVMFLLAISLAIRILCL 70
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 156 SFSLVVLGTFPLIVMFLLAISLAIRILCL 70
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 156 SFSLVVLGTFPLIVMFLLAISLAIRILCL 70
           S ++ +LGT+   +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 465 PYVSASRFNPVSVKETSSHDC-TVKGTNGR 379
           PYV+ S ++P S+     + C T K  NG+
Sbjct: 854 PYVNGSEYHP-SIVSLGEYKCVTCKCENGK 882


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -1

Query: 159 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 70
           +S ++ ++GT+   +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -1

Query: 159 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 70
           +S ++ ++GT+   +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 153 FSLVVLGTFPLIVMFLLAISLAIRILC 73
           F L    TF  +V  L+  SLAI +LC
Sbjct: 398 FRLSKTKTFCTLVTALVYCSLAIFVLC 424


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 92  NEIASKNITMRGNVPKTTKEKED 160
           N ++S N  +RG   KT K +ED
Sbjct: 92  NVVSSTNQEIRGPKRKTWKVEED 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,902
Number of Sequences: 336
Number of extensions: 3351
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)