Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20634
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.9  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   7.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   7.5  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 88  RQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 246
           + + RQ K + E       + ++R I C  L PC   ++S   C  P++PI +
Sbjct: 2   QMKPRQDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 485 IDCRIFDEFCLFFNIIFKDNSSHKF 559
           IDC IF   CL + I F D +S+ +
Sbjct: 61  IDCTIFPVMCLVYCIQFLDKTSNSY 85


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 168 GYWSSFSLVVLGTFPLIVMFLLAISLAIRILCLWAILF 55
           G+W  F +  L    L V     I     ++  WAILF
Sbjct: 65  GFWGKFGIACLLAIALTVPLTRQIFFPAIVIITWAILF 102


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 180 QGATGYWSSFSLVVLGTFPLIVMFLLA 100
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 232 YLEH-SRATHYEDEESKEP 179
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 168 GYWSSFSLVVLGTFPLIVMFLLAISLAI--RILCLWAIL 58
           G W+ +S V       IV+F+  + L I  R+  LW+++
Sbjct: 367 GNWNQYSAVESAMISFIVLFMTWLKLLIPWRLFRLWSLI 405


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -1

Query: 546 ELSLKIILKKRQNSSKILQSIPQRP**PYVSASRFNPVSVKETSSHDCTVKGTNGR 379
           + SL  + ++   S KI + IP++   P +S+ +F+  S +  +    +    NGR
Sbjct: 49  QFSLLSLSQRSFQSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGR 104


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 559  EFVA*VVFKNYIEKETKFIEN 497
            E++A +VFK  +EKE ++ EN
Sbjct: 1104 EYLAEIVFKTLVEKEREWREN 1124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,535
Number of Sequences: 5004
Number of extensions: 54958
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)