Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20634
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           30   1.5  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_51059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 193 LHLRSVWLCCVPDNPINKTSLITKT 267
           +H R +W+C +PD+P  +  +IT T
Sbjct: 37  IHFRRLWICNLPDHPKYQNGIITST 61


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +2

Query: 98  IASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 241
           +A++N    G  P+   ++ D+  + P     F++++ G+AVFQ I+S
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIES 174


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -1

Query: 222  TAEPHTTKMKRARSQGAT--GYWSSFSLVVLGTFPL-IVMFLLAISLAIRILCLW 67
            TA P  T+ + + +QG+T   ++  F L   G   + IV+FL+ +  AI ++C W
Sbjct: 1031 TARPLVTRAQ-SETQGSTLLSFFKEFRLFPQGIVAIGIVLFLVLVIAAIVLVCKW 1084


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 530 LY*KRDKIHRKFYNRYLNVPNNLMYRRPVLTL*V*KRHQA 411
           LY   +K+H  +Y  Y   PN + Y+RPV    + ++++A
Sbjct: 281 LYDLLEKLHSSYYEMY---PNKIAYKRPVTVEEIRRKYRA 317


>SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 225 NTAEPHTTKMKRARSQGATGYWSSFSLVVLGTFPLIVMFL 106
           +TAEPHT   +  ++ G  G W  F +  L T PL+V  L
Sbjct: 138 STAEPHT---EMRQTSGCQGLWGQFIISALLT-PLVVHLL 173


>SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 314 WIVLLFYCVFDSSSPVVFVIKLVLLIGLSGTQQS 213
           W+  L + +F    P VFVI++   IG+  TQ +
Sbjct: 222 WVTALGFVIFGYFIPFVFVIRIAKDIGVPDTQST 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,849,120
Number of Sequences: 59808
Number of extensions: 398840
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)